Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g46690 | OGI:04082720 | 45/50 | Nipponbare | IRGSP 1.0 | MSU | Chr04:27680027-27687609 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Tumba_Nipponbare_DEL0450880,Tumba_Nipponbare_DEL0456180,NamRoo_Nipponbare_DEL0427100,127742_Nipponbare_DEL0458020,127742_Nipponbare_INS0458220,XL628S_Nipponbare_DEL0438830,XL628S_Nipponbare_DEL0438850,XL628S_Nipponbare_INS0461030,XL628S_Nipponbare_DEL0461820,R527_Nipponbare_INS0448380,R527_Nipponbare_DEL0455760,LK638S_Nipponbare_DEL0437210,LK638S_Nipponbare_DEL0437230,LK638S_Nipponbare_INS0453950,LK638S_Nipponbare_INS0460130,CN1_Nipponbare_DEL0450490,CN1_Nipponbare_INS0453060,132278_Nipponbare_DEL0427480,MH63RS3_Nipponbare_DEL0451000,MH63RS3_Nipponbare_INS0453500,ZS97RS3_Nipponbare_DEL0437090,ZS97RS3_Nipponbare_DEL0437110,ZS97RS3_Nipponbare_INS0460340,ZS97RS3_Nipponbare_DEL0460870,127518_Nipponbare_TRA0447770,127518_Nipponbare_INS0455310,II32_Nipponbare_DEL0436740,II32_Nipponbare_DEL0436760,II32_Nipponbare_INS0452960,II32_Nipponbare_INS0459140,DG_Nipponbare_DEL0440240,DG_Nipponbare_DEL0440260,DG_Nipponbare_INS0455760,DG_Nipponbare_INS0455990,HZ_Nipponbare_DEL0442460,HZ_Nipponbare_TRA0443160,FS32_Nipponbare_DEL0437330,FS32_Nipponbare_DEL0437350,FS32_Nipponbare_INS0450990,FS32_Nipponbare_INS0452930,G630_Nipponbare_INS0452080,G630_Nipponbare_INS0452320,132424_Nipponbare_DEL0440820,132424_Nipponbare_DEL0440840,132424_Nipponbare_DEL0462350,132424_Nipponbare_DEL0463930,G46_Nipponbare_DEL0437090,G46_Nipponbare_DEL0437110,G46_Nipponbare_DEL0443880,G46_Nipponbare_INS0451460,S548_Nipponbare_DEL0439780,S548_Nipponbare_TRA0440500,117534_Nipponbare_INS0406730,117534_Nipponbare_DEL0434410,117534_Nipponbare_DEL0434430,117534_Nipponbare_INS0455720,YX1_Nipponbare_INS0448130,YX1_Nipponbare_INS0448320,D62_Nipponbare_DEL0443100,D62_Nipponbare_INS0451200,WSSM_Nipponbare_DEL0448550,WSSM_Nipponbare_DEL0457820,127564_Nipponbare_DEL0450830,127564_Nipponbare_DEL0451510,R9311_Nipponbare_DEL0446460,R9311_Nipponbare_INS0454830,FH838_Nipponbare_DEL0434670,FH838_Nipponbare_DEL0434690,FH838_Nipponbare_INS0449570,FH838_Nipponbare_INS0449800,G8_Nipponbare_DEL0445230,G8_Nipponbare_INS0453200,OglaRS2_Nipponbare_INS0448590,OglaRS2_Nipponbare_INS0450140,OglaRS2_Nipponbare_INS0450160_3,IR64_Nipponbare_DEL0444710,IR64_Nipponbare_DEL0460290,Y3551_Nipponbare_DEL0425880,Y3551_Nipponbare_INS0450130,127652_Nipponbare_DEL0435260,127652_Nipponbare_DEL0435280,127652_Nipponbare_DEL0447720,127652_Nipponbare_DEL0462050,127652_Nipponbare_DEL0464280,Azucena_Nipponbare_DEL0432270,R498_Nipponbare_INS0447470,R498_Nipponbare_INS0447690,125827_Nipponbare_DEL0446640,125827_Nipponbare_INS0461260,TM_Nipponbare_INS0450730,TM_Nipponbare_DEL0457470,
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| DNA seq | ATGGCGGCTAGATCAGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGTGGCGGCGATTCATCGACGACGGTTAGGGCTGTCAAAAAAGCTCGGAGCTCGCGAGCAGCTCGAGCTCGGCTCGTCGCAAGCTCAGCTCGAGTTCGACTCGGCAAGGATTCGAGCCGAGCTCGAGCTTGTCTCGAAGCTCGCGAGCTCTACCGAGCCGAGCTCGAGCTATTCGGCAGAAGCTTGAAATTTTCACTCCCGCTACCTATCCCAATTTCTCCCGCACTCCAATTCCAAAATCCTACCACCAACAGCAGTCCATCACCTAACCATTTATTTCCCTTATATCCCCATCCCGTATCCAAACCCTAGCTCATTTGCTCTCTTCCTCGAAACATTTCTCTTCTAGATCTACAATCCTAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCCATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCGTGAGTGACGAACCGACGACTCGGATCTGAGTAAGTTTCCTCTTCTTTCTTTGTTTTACATTTTTATTTCTTTTGCACCCACATGTATCTAGGGCCCTACATGTATTAATTGTGTAGTGTTTAGTTGCTTGATGGATGTTATTGATTTACATTGAATTTTATGGACTAGGTGGAGACATAGAGTAGTACTTATCTTGCTGTCCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTACCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTATAGAGATCGAGTCACCGAGCAATAGGGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCCATGAGTTGCCATTTTACCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGATAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGATGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACATGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAAATTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTTTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCACAGCTCTTTACTCCCATCAACAGCACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAATAGAGATACACAATCTAATAATCTGTGTTTACTTGTTTGTTGCATACTAGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTTCAACTGCAAATTCGGTTGTGGGCAGCAATTAGACTCGTTTGTCAGGTATATGTTTGAGGTTATATAAATTATCTATTGCTACCATATCAATTCCTCATCACTGATGAAACATTACCTATAATCTTTGCACATGGTTTCAGATTTAACTTTACGAAACATTAATGCAGGCATATAGTATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTGTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATTCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCCCGAGCTCGAGCCTGTACCGAGCTTGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCGGCTCGTTGACAGCCCTAGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTGCGGCTGCGCGCGTCCGTGCGCGGCGTCTCAGGGTCTAGCTCGCCGTTGACCATGCAGCCCCCGAACGGTGGCGAGCGGGGGCACGGCAATCCGGGTCGCCGCCGTGGATCTTCAAGGTATGTGTGCCTGCTCCCGTCCTTCTTCAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCTTGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATATTTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAG
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| CDS seq | MAARSGMGGGCSSAPLTTAVDLAKHRPSFASPVQEEPHGGQQQPTASAMSVNLQRQLSIEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVHELPFYLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLDFKFEGDRRYSHRVHEYRGATGWLQGDMVNLERHGLIPVGTSSGRDMKSKDPILKEMANAMLEKFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFFAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYHSSLLPSTAQALVNMDLAPSLDLIGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN
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| Protein seq | MAARSGMGGGCSSAPLTTAVDLAKHRPSFASPVQEEPHGGQQQPTASAMSVNLQRQLSIEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVHELPFYLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLDFKFEGDRRYSHRVHEYRGATGWLQGDMVNLERHGLIPVGTSSGRDMKSKDPILKEMANAMLEKFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFFAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYHSSLLPSTAQALVNMDLAPSLDLIGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g46690 | LOC_Os04g46690.1 | Chr04 | 27680027 | 27687609 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCTAGATCAGGGATGGGTGGAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCCATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCATGTCTGTAAACCTGCAAAGACAGCTATCTATAGAGATCGAGTCACCGAGCAATAGGGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCCATGAGTTGCCATTTTACCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGATAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGATGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACATGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAAATTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTTTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCACAGCTCTTTACTCCCATCAACAGCACAAGCTTTGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAG
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| Protein seq | MAARSGMGGGCSSAPLTTAVDLAKHRPSFASPVQEEPHGGQQQPTASAMSVNLQRQLSIEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVHELPFYLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLDFKFEGDRRYSHRVHEYRGATGWLQGDMVNLERHGLIPVGTSSGRDMKSKDPILKEMANAMLEKFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFFAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYHSSLLPSTAQALVNMDLAPSLDLIGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0510000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40350 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0510000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0436000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0437400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021670 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g17583 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0283800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0277900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0259900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0277800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0407405500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0416655500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_016865 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414160700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415984700.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0408247300.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0409206900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0411768700.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0408231900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0408186900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0407326300.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0408670500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0415771300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409434100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409336700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0407397300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0407389900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409162500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0409044900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0420366700.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411811700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0407303100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0407334700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408815500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0401328500.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0412433100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
