Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: LK638S_Nipponbare_INS0460130

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: Longke638S | LK638S

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

33043676

33044316

SV Length:

Query Start:

Query End:

Allele sv Count:

640 bp

27684167

27684806

17

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
LK638S_02428_INS0462080	Chr04	33043676	33044316	28072911	28073550	640
LK638S_125619_INS0442770	Chr04	33043676	33044316	28678587	28679226	640
LK638S_128077_INS0454760	Chr04	33043676	33044316	26352056	26352695	640
LK638S_132278_INS0460200	Chr04	33043676	33044316	27556971	27557610	640
LK638S_Azucena_INS0458400	Chr04	33043676	33044316	26274365	26275004	640
LK638S_Basmati1_INS0458200	Chr04	33043676	33044316	26041893	26042532	640
LK638S_DHX2_INS0463280	Chr04	33043676	33044316	26945123	26945762	640
LK638S_J4155_INS0444970	Chr04	33043676	33044316	27221373	27222012	640
LK638S_J4155S_INS0447070	Chr04	33043676	33044316	27789278	27789917	640
LK638S_Kosh_INS0462610	Chr04	33043676	33044316	27741657	27742296	640
LK638S_KY131_INS0460170	Chr04	33043676	33044316	28170233	28170872	640
LK638S_Lemont_INS0457890	Chr04	33043676	33044316	27074394	27075033	640
LK638S_LJ_INS0462660	Chr04	33043676	33044316	27072905	27073544	640
LK638S_Nipponbare_INS0460130	Chr04	33043676	33044316	27684167	27684806	640
LK638S_Y58S_INS0441430	Chr04	33043676	33044288	24480360	24480971	612
LK638S_Y58S_INS0441430_1	Chr04	33043676	33044316	28880083	28880722	640
LK638S_ZH11_INS0463120	Chr04	33043676	33044316	27231030	27231669	640

>LK638S_Nipponbare_INS0460130
GGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA