Variation ID: 127652_Nipponbare_DEL0435260

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os cA2: NATEL BORO | Os127652RS1
Os GJ-temp: Nipponbare | IRGSP 1.0
Chr04
12983605
12984000
SV Length:
Query Start:
Query End:
Allele sv Count:
396 bp
27679732
27680127
39
Gene_id Chromosome Start End
LOC_Os04g46690 Chr04 27680026 27687609
SV_id Chromosome ref_start ref_end query_start query_end length
127652_02428_DEL0435010 Chr04 12983605 12984000 28068477 28068872 396
127652_117425_DEL0430260 Chr04 12983605 12984000 26487702 26488097 396
127652_125619_DEL0429580 Chr04 12983605 12984000 28674152 28674547 396
127652_125827_DEL0423880 Chr04 12983605 12984000 29653418 29653813 396
127652_127518_DEL0427100 Chr04 12983605 12984000 28876461 28876856 396
127652_127564_DEL0425080 Chr04 12983605 12984000 29152580 29152975 396
127652_127742_DEL0422050 Chr04 12983605 12984000 28906285 28906680 396
127652_128077_DEL0434020 Chr04 12983605 12984000 26347621 26348016 396
127652_132278_DEL0435400 Chr04 12983605 12984000 27552536 27552931 396
127652_Azucena_DEL0434210 Chr04 12983605 12984000 26269930 26270325 396
127652_Basmati1_DEL0430950 Chr04 12983605 12984000 26037459 26037854 396
127652_CN1_DEL0427200 Chr04 12983605 12984000 28303555 28303950 396
127652_D62_DEL0424700 Chr04 12983605 12984000 28336112 28336507 396
127652_DHX2_DEL0434820 Chr04 12983605 12984000 26940689 26941084 396
127652_G630_DEL0425520 Chr04 12983605 12984000 28918030 28918425 396
127652_G8_DEL0427270 Chr04 12983605 12984000 28615502 28615897 396
127652_HZ_DEL0422130 Chr04 12983605 12984000 29077952 29078347 396
127652_IR64_DEL0426240 Chr04 12983605 12984000 27263808 27264203 396
127652_J4155_DEL0433440 Chr04 12983605 12984000 27216938 27217333 396
127652_J4155S_DEL0435110 Chr04 12983605 12984000 27784843 27785238 396
127652_Kosh_DEL0435730 Chr04 12983605 12984000 27737222 27737617 396
127652_KY131_DEL0435960 Chr04 12983605 12984000 28165798 28166193 396
127652_Lemont_DEL0433260 Chr04 12983605 12984000 27069959 27070354 396
127652_LJ_DEL0433720 Chr04 12983605 12984000 27068470 27068865 396
127652_NamRoo_DEL0436370 Chr04 12983605 12984000 28024669 28025064 396
127652_Nipponbare_DEL0435260 Chr04 12983605 12984000 27679732 27680127 396
127652_R498_DEL0426640 Chr04 12983605 12984000 27798469 27798864 396
127652_R527_DEL0428410 Chr04 12983605 12984000 28379130 28379525 396
127652_R9311_DEL0422030 Chr04 12983605 12984000 28987040 28987433 394
127652_S548_DEL0428570 Chr04 12983605 12984000 27860187 27860582 396
127652_TM_DEL0426880 Chr04 12983605 12984000 27024824 27025219 396
127652_Tumba_DEL0426610 Chr04 12983605 12984000 29345900 29346295 396
127652_WSSM_DEL0421920 Chr04 12983605 12984000 28467208 28467603 396
127652_Y3551_DEL0429310 Chr04 12983605 12984000 29139593 29139988 396
127652_Y58S_DEL0423950 Chr04 12983605 12984000 28875648 28876043 396
127652_YX1_DEL0426280 Chr04 12983605 12984000 27361865 27362260 396
127652_ZH11_DEL0435490 Chr04 12983605 12984000 27226595 27226990 396
127652_OglaRS2_DEL0441140 Chr04 12983605 12984188 24354508 24355091 584
127652_MH63RS3_DEL0429230 Chr04 12983605 12984000 29399278 29399673 396

>127652_Nipponbare_DEL0435260
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTGGGCTGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCTAGATCAGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGTGGCGGCGATTCATCGACGA

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.