Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_Nipponbare_INS0459140

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1A: II32 | II32

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

33056585

33058398

SV Length:

Query Start:

Query End:

Allele sv Count:

1818 bp

27682347

27684164

11

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_02428_INS0461090	Chr04	33056585	33058398	28071092	28072908	1817
II32_02428_INS0461090_1	Chr04	33056585	33059430	32940474	32943336	2863
II32_132278_INS0460560	Chr04	33056585	33058398	27555151	27556968	1818
II32_132278_INS0460560_1	Chr04	33056585	33059430	32519472	32522334	2863
II32_J4155_INS0450720	Chr04	33056585	33058398	27219553	27221370	1818
II32_J4155S_INS0453170	Chr04	33056585	33058398	27787458	27789275	1818
II32_NamRoo_INS0461820	Chr04	33056585	33058398	28027279	28029096	1818
II32_Nipponbare_INS0459140	Chr04	33056585	33058398	27682347	27684164	1818
II32_Y58S_INS0433320	Chr04	33056585	33057191	24480360	24480968	609
II32_Y58S_INS0433320_1	Chr04	33056585	33058398	28878263	28880080	1818
II32_ZH11_INS0459930	Chr04	33056585	33060139	27587604	27591205	3602

>II32_Nipponbare_INS0459140
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATT