Variation ID: DG_Nipponbare_INS0455990

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os XI-1A: DG | DG
Os GJ-temp: Nipponbare | IRGSP 1.0
Chr04
27932404
27934218
SV Length:
Query Start:
Query End:
Allele sv Count:
1818 bp
27682347
27684164
41
Gene_id Chromosome Start End
LOC_Os04g46690 Chr04 27680026 27687609
SV_id Chromosome ref_start ref_end query_start query_end length
DG_02428_INS0454570 Chr04 27932404 27934218 28071092 28072908 1817
DG_02428_INS0454570_1 Chr04 27932404 27935173 6413136 6415923 2788
DG_02428_INS0454570_2 Chr04 27932404 27936267 28433028 28436961 3934
DG_117425_INS0443460 Chr04 27932404 27934218 26490317 26492134 1818
DG_117425_INS0443460_1 Chr04 27932404 27936267 26856826 26860761 3936
DG_117534_INS0444900 Chr04 27932404 27936267 27327167 27331104 3938
DG_128077_INS0449130 Chr04 27932404 27934218 26350236 26352053 1818
DG_128077_INS0449130_1 Chr04 27932404 27935173 6356794 6359581 2788
DG_128077_INS0449130_2 Chr04 27932404 27936267 26708477 26712412 3936
DG_132278_INS0453020 Chr04 27932404 27934218 27555151 27556968 1818
DG_132278_INS0453020_1 Chr04 27932404 27936267 27909166 27913099 3934
DG_Azucena_INS0451470 Chr04 27932404 27934218 26272545 26274362 1818
DG_Azucena_INS0451470_1 Chr04 27932404 27934462 12531627 12533662 2036
DG_Azucena_INS0451470_2 Chr04 27932404 27935931 30910852 30914371 3520
DG_Azucena_INS0451470_3 Chr04 27932404 27936267 26664721 26668656 3936
DG_Basmati1_INS0451420 Chr04 27932404 27934218 26040073 26041890 1818
DG_Basmati1_INS0451420_1 Chr04 27932404 27936267 26398447 26402383 3937
DG_DHX2_INS0457540 Chr04 27932404 27934218 26943303 26945120 1818
DG_DHX2_INS0457540_1 Chr04 27932404 27935173 6490196 6492982 2787
DG_DHX2_INS0457540_2 Chr04 27932404 27935608 27301689 27304902 3214
DG_J4155_INS0443780 Chr04 27932404 27934218 27219553 27221370 1818
DG_J4155_INS0443780_1 Chr04 27932404 27935173 6314612 6317399 2788
DG_J4155S_INS0445980 Chr04 27932404 27934218 27787458 27789275 1818
DG_J4155S_INS0445980_1 Chr04 27932404 27935173 6458490 6461277 2788
DG_J4155S_INS0445980_2 Chr04 27932404 27936267 28182966 28186905 3940
DG_Kosh_INS0458790 Chr04 27932404 27935173 7072351 7075138 2788
DG_Kosh_INS0458790_1 Chr04 27932404 27936267 28098288 28102227 3940
DG_Lemont_INS0452260 Chr04 27932404 27935173 6081863 6084650 2788
DG_Lemont_INS0452260_1 Chr04 27932404 27935931 31639886 31643405 3520
DG_Lemont_INS0452260_2 Chr04 27932404 27936267 27442604 27446525 3922
DG_LJ_INS0455070 Chr04 27932404 27936267 27432235 27436171 3937
DG_NamRoo_INS0455680 Chr04 27932404 27935173 6558939 6561726 2788
DG_NamRoo_INS0455680_1 Chr04 27932404 27936267 28386926 28390859 3934
DG_Nipponbare_INS0455990 Chr04 27932404 27934218 27682347 27684164 1818
DG_Nipponbare_INS0455990_1 Chr04 27932404 27935173 6674263 6677051 2789
DG_Nipponbare_INS0455990_2 Chr04 27932404 27936267 28040600 28044536 3937
DG_Y58S_INS0440810 Chr04 27932404 27934218 28878263 28880080 1818
DG_Y58S_INS0440810_1 Chr04 27932404 27936267 29248374 29252310 3937
DG_YX1_INS0432520 Chr04 27932404 27935931 14285386 14288919 3534
DG_ZH11_INS0457050 Chr04 27932404 27935173 6467871 6470657 2787
DG_ZH11_INS0457050_1 Chr04 27932404 27936267 27587604 27591552 3949

>DG_Nipponbare_INS0455990
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATT

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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