Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127518_Nipponbare_INS0455310

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

27980840

27981485

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

9

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127518_125619_INS0438240	Chr04	27980840	27981485	28678585	28679226	642
127518_J4155_INS0447510	Chr04	27980840	27981485	27221371	27222012	642
127518_J4155S_INS0449130	Chr04	27980840	27981485	27789276	27789917	642
127518_Kosh_INS0457180	Chr04	27980840	27981485	27741655	27742296	642
127518_KY131_INS0456670	Chr04	27980840	27981485	28170231	28170872	642
127518_Lemont_INS0454080	Chr04	27980840	27981485	27074392	27075033	642
127518_NamRoo_INS0457160	Chr04	27980840	27981485	28029097	28029738	642
127518_Nipponbare_INS0455310	Chr04	27980840	27981485	27684165	27684806	642
127518_Y58S_INS0435760	Chr04	27980840	27981485	28880081	28880722	642

>127518_Nipponbare_INS0455310
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA