Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_Nipponbare_DEL0460870

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: Zhenshan 97 | ZS97RS3

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

33830697

33832485

SV Length:

Query Start:

Query End:

Allele sv Count:

1820 bp

27682347

27684166

3

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_Azucena_DEL0457400	Chr04	33830697	33832485	26272545	26274364	1820
ZS97RS3_LJ_DEL0461610	Chr04	33830697	33832485	27071085	27072904	1820
ZS97RS3_Nipponbare_DEL0460870	Chr04	33830697	33832485	27682347	27684166	1820

>ZS97RS3_Nipponbare_DEL0460870
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA