Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FS32_Nipponbare_INS0452930

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1A: FS32 | FS32

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

27510476

27511121

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

17

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FS32_02428_INS0451120	Chr04	27510476	27511121	28072909	28073550	642
FS32_125619_INS0439720	Chr04	27510476	27511121	28678585	28679226	642
FS32_128077_INS0446810	Chr04	27510476	27511121	26352054	26352695	642
FS32_132278_INS0450630	Chr04	27510476	27511121	27556969	27557610	642
FS32_Azucena_INS0448590	Chr04	27510476	27511121	26274363	26275004	642
FS32_Basmati1_INS0449970	Chr04	27510476	27511121	26041891	26042532	642
FS32_DHX2_INS0452560	Chr04	27510476	27511121	26945121	26945762	642
FS32_J4155_INS0444450	Chr04	27510476	27511121	27221371	27222012	642
FS32_J4155S_INS0446360	Chr04	27510476	27511121	27789276	27789917	642
FS32_Kosh_INS0452460	Chr04	27510476	27511121	27741655	27742296	642
FS32_KY131_INS0450060	Chr04	27510476	27511121	28170231	28170872	642
FS32_Lemont_INS0449640	Chr04	27510476	27511121	27074392	27075033	642
FS32_LJ_INS0452420	Chr04	27510476	27511121	27072903	27073544	642
FS32_NamRoo_INS0451700	Chr04	27510476	27511121	28029097	28029738	642
FS32_Nipponbare_INS0452930	Chr04	27510476	27511121	27684165	27684806	642
FS32_Y58S_INS0434670	Chr04	27510476	27511121	28880081	28880722	642
FS32_ZH11_INS0451520	Chr04	27510476	27511121	27231028	27231669	642

>FS32_Nipponbare_INS0452930
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA