Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: HZ_Nipponbare_DEL0442460

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-adm: Huazhan | HZ

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

20496137

20496779

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

7

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
HZ_117425_DEL0438020	Chr04	20496137	20496779	26492135	26492776	642
HZ_Azucena_DEL0443040	Chr04	20496137	20496779	26274363	26275004	642
HZ_Basmati1_DEL0439880	Chr04	20496137	20496779	26041891	26042532	642
HZ_DHX2_DEL0444180	Chr04	20496137	20496779	26945121	26945762	642
HZ_LJ_DEL0446710	Chr04	20496137	20496779	27072903	27073544	642
HZ_Nipponbare_DEL0442460	Chr04	20496137	20496779	27684165	27684806	642
HZ_Y58S_DEL0415320	Chr04	20496137	20496779	28880081	28880722	642

>HZ_Nipponbare_DEL0442460
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA