Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsYX1G0412433100.01 | OGI:04094180 | 39/50 | Os XI-adm: YX1 | YX1 | SICAU | Chr04:27362860-27365156 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Nipponbare_YX1_DEL0439320,J4155_YX1_DEL0434390,132278_YX1_DEL0437710,J4155S_YX1_DEL0438270,128077_YX1_DEL0430160,OglaRS2_YX1_INS0455590,127564_YX1_DEL0427890,FH838_YX1_DEL0428040,02428_YX1_DEL0439550,Tumba_YX1_DEL0429120,FS32_YX1_DEL0426310,117425_YX1_DEL0428110,DG_YX1_DEL0424940,Azucena_YX1_DEL0430030,
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| DNA seq | TTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAA
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| CDS seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVYELPFCLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLGQLLKSKDPILKEMANAMLENFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFSAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYRSSLLPSTVQALVCTSSWIRGGHHKSTYLVSSYIFMFLTN
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| Protein seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVYELPFCLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLGQLLKSKDPILKEMANAMLENFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFSAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYRSSLLPSTVQALVCTSSWIRGGHHKSTYLVSSYIFMFLTN |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsYX1G0412433100.01 | OsYX1G0412433100.01.T01 | Chr04 | 27362860 | 27365156 | + | IGDBv1 | ||
| CDS seq | ATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAA
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| Protein seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIVYELPFCLVEYTWFNVLLKRLNPSYKKVSRNTIRSDCMRLYESEKEKLKRTFKDVRKISLTCDLWTSNQTICYMSLVAHYIDADWSMHCRVINFLELEPPHTGVVIANAISDCLASWRIEDKIASITFDNASSNDSAANLLLAKFTKRGSLWFYGKFLHIRCCAHILNLIVQDGLAVIKHIIDKVRDTIKYIKKSNNRAYKFSADIDSLNLKSDMGLAIDSCTRWGSTFKMLQSAFFYRSALDVYAAGDANYRWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLGQLLKSKDPILKEMANAMLENFEKYWGPECNTLFAVALVLDPRFKMGMINYTFPALYEETVLPKKLANVESTLKSLHASYESELQSTSKENDATTQSTSTSLGTTSSHFSAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGGQVISDYRSSLLPSTVQALVCTSSWIRGGHHKSTYLVSSYIFMFLTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0365550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0365550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027550 | RBH | 0.997823 | 14.929879 | 7.169707 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028340 | RBH | 0.322403 | 1.722096 | 3.304581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028050 | RBH | 1.502465 | 8.118349 | 10.972941 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027830 | RBH | 0.155189 | 0.321003 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0397000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0437400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021830 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021920 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027680 | RBH | 0.135441 | 7.204219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021670 | SBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g17583 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0251000 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0244500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0229100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0244000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0407367700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0416654500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_017437 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414160700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415984700.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0719048100.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0411768700.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0408669700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0416422300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409434100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409336700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0814032700.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409162500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0420366700.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411811700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0702857300.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408815500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0401328500.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0719357100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
