Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsS548G0420366700.01 | OGI:04094180 | 39/50 | Os XI-1B: S548 | S548 | SICAU | Chr04:27861182-27861866 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Azucena_S548_DEL0428990,117425_S548_DEL0430340,02428_S548_DEL0439140,Tumba_S548_DEL0431840,128077_S548_DEL0432700,J4155S_S548_DEL0434900,FS32_S548_DEL0427090,DG_S548_DEL0428410,132278_S548_DEL0436090,OglaRS2_S548_INS0456080,FH838_S548_DEL0432290,Nipponbare_S548_DEL0437700,J4155_S548_DEL0431570,127564_S548_DEL0431720,
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| DNA seq | TTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTA
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| CDS seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIV |
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| Protein seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsS548G0420366700.01 | OsS548G0420366700.01.T01 | Chr04 | 27861182 | 27861866 | + | IGDBv1 | ||
| CDS seq | ATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTC
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| Protein seq | MSVNLQRQLSVEIESPSNRDGIAATEAQPNQQLVPGEVRGEEGQEGNPTKATRKKKSPLWDFFEECTVPSKKKKGEMENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRELICKMIIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0543600 | SBH | 0.021802 | 0.014615 | 0.4391765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0437400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021830 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021920 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021670 | SBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0416654500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414160700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415984700.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0409350000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0411768700.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0408669700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0724301900.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409434100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409336700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0407489000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409162500.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0420366500.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411811700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0407390600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408815500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0401328500.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0412433100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
