Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0028340 | OGI:04094180 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:30669552-30673374 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accctcaaacaattcagataagcaggtaaacaaggctgcacataacacagattaattgctcataacagaggatatttgcaacattctcgtcgtacaactcctagttcctacttgacctaaggctctgggctgacctgaactttggctaaacaacggcatacatctgcactacaccaggcaaatgcatggggtgatgggagtaacatttatatgcatacacatctcgactgaaatgaagtttaacagctcccaaatgcttgatacaccatgttggggctcgatcatcagagcggttatccttggtcagaagcaccatcatacactgcctgaaatcttccaccggcgaaagctgcatgcaacccatctcaacagttcactgcagcataccatttttcaagcaattgcacatgaatagattggatgaggatataccagaactgcattgatttaataagtgaaatttcaacagcgaccttcttttgtcatgtaagagcatatagcaaaaagatgtgaggaatcaagttcctaatgagatatcatcatgattatatggacacaaactataacgcacaaacttattaagtgatccaaagcatgcaatcacagaacaagatattcatgattgccaatgggatcaaaatgtttcaattacaaattacaagcatgatctaaaacatcctaaagtgatgtagctgctaagattgcacatgaacatgtaagattctaatatgtacttccatataaagttactaacattgtaggctttggtttctgacattcatctgatcatatagtatggttccaaacttccaatacaggaaaacaaggaaacaagattctggtaataagaaaacatggactaaatcacagtgtgttcacactaccaaaatcacaaagataggatggagctgagtagcaatttatagaatcttaccagttttatctcatccaatctcgagtacaaacaagtgcctcgattgttctgatgtttaatgtactctggtgctttggaattactggtccactgctactgaatgctgcttcagattgaacagcagatgctggcatggctaagatgtcccgtgcaatagttgcaagtgttgggtacttagtactatgagtcatccaccagtttaaaatatcaaaatcatcctttctaggaactaaaccatcttcaaggtaatcatcaagctccgaagatagctgacgacttgcttgttcatggagatgctgatcccaatcttccaacgaatcattatcatctgcacacaaagcttcactgtttgaaacaacatcacttgcctgattcaaagaatggcagtattcattgaagagttcccggactgtttcacgtattacagataggtagcttgccgaatctgttccaaaagctcgtttcagacgaaactcaatgaaactgaatttgaatctagggtctagcacaacaggtatggccaaccacaaatatgaattttgccaatactcattgaatgcttcctgcatcaccatagccactgtagctatttctctgtgatcatttaatgcttcttcttgcaaaactgtcctgactttccatatctcgttaaaatatatatttgctgtcggagagctagggctggaaataacttcaatgacacgataaattgtcctcaaaatcttgcaaacggactcagcagtttttgtatcttctggggacaccctttcttcagaaggaaatgacttcttgaaatgcaaaagcacttcaagtctaaaataaagtttgtgccaccacttagcatcttcttgtggacactttagacccgtctgtgaaataacttccagaagctgctgctgggtcaatgacactaaaaaatccattactatgtcaccaacaagacgaagtatatctgcttgcactttgaaaacaatactgttaaggacatagtccacacaggcaacattgaatagcgtccctccaataggaaggcacttcttctctataagcatttcctttagcaatgaagtattggtgtcacccctaacttcaccaacagaagtcaagcttaaaagcttctgatcaagattccaatctctaatggcatccaatatgacattatatgatccgctctcagactctgggacacaggcttccatacaatgtatcatcctttccaaatcagcaggcgcggaccaaaacattccaaattttattattatcctatgaactttccagtcttcatcaatataatgtgctgtcaaacagaggtaatttactgttgtctcaggtccatcaggagtccagatgcttgctgacagagagacacgtcgggaaaaatgtgcaattttaccctttatattttccttttccttctgaaatagtgtcaagcaatgttcttccatagcattgcgagagactaaattgaccacagggttgagtttctttacaaatctcaacatttcttcgtgctccacaattgacaaaggataaccatgcaaagctatcatcccgactaggtctggatcagatgtttcctgaccagctggagtggtcacaaatgaggtcctctgtttcatcaggcttgtataatctggagtcggcacggaatgctctgctggtaccactcgaatgggcttaggggtcgagtcaccagagctacttgccctcagaagcttgctagagtattctgcgatctgaaccttcccatttgtcaaggcaggtgagagctcatcttgcaccctggacttcaaactaggcacgctagaaggataaaataaacccttctgatgaatttggccccctccacgtccacgtcgtcctgcacaggttataagatgtcgactcagatggcttctccccccgaacttattcgcactgaggcgcttctggcagtgaatgcaatctgcagcctggagtttcccctcaatatagacaggtgtaaactccttccacacctttgacgtgaatctgttaccgctgggtgttaccgagtttatatcactaagcgtctctgtaataacatcattgaccggatcgtggggtgaaactggatcgttctcattcaccaaaactgtgcatataaaatatggaaacgttatttatattcctgaggtaaatcgcctttataaaggaatatctacatctcaagatcctaaaccacaccaatgttaacttatctacactattgagtaatgaatgaacccagaataggcaagaatggtataccgcatgggaagtaggaatccttctgtcgcctctgcgccgcttcctccttgccagggcagattttctgatgccgccatagatggcttgtgccgttggaatctttgcagctgaggcgattatggcagtagagacactccgcaaactgaaccttcccattcagaaagatgggcttgtactcctcccaaaccttggaccttttcttgtgcctgtaccggaacgggctgtgcactccatcaaatgccacatccactttcatgctgttatcctcctcatgctcctctccaggaacaggatgctccatagtgttttggagtgaatcatgatccattcatgggcggatctaacatggggcatggggggttcagttcaacacccccaaactttttgggaacaaacaaacatcaaggttaagccaaatttctgcaacagaagctagggttaacgcaaattcgataaaaaaaaagagagagggagagatgggaaagaggatgtgctaaccaggatgcggcggaagcagcaggatgctcgctcgcgggatggatggggggatcggcgcaggcggcggcggcggcggcgaaggatgtggatgcggcggaagcagcaggacgagcggcagcgccg
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| CDS seq | atggatcatgattcactccaaaacactatggagcatcctgttcctggagaggagcatgaggaggataacagcatgaaagtggatgtggcatttgatggagtgcacagcccgttccggtacaggcacaagaaaaggtccaaggtttgggaggagtacaagcccatctttctgaatgggaaggttcagtttgcggagtgtctctactgccataatcgcctcagctgcaaagattccaacggcacaagccatctatggcggcatcagaaaatctgccctggcaaggaggaagcggcgcagaggcgacagaaggattcctacttcccatgcgttttggtgaatgagaacgatccagtttcaccccacgatccggtcaatgatgttattacagagacgcttagtgatataaactcggtaacacccagcggtaacagattcacgtcaaaggtgtggaaggagtttacacctgtctatattgaggggaaactccaggctgcagattgcattcactgccagaagcgcctcagtgcgaataagttcggggggagaagccatctgagtcgacatcttataacctgtgcaggacgacgtggacgtggagggggccaaattcatcagaagggtttattttatccttctagcgtgcctagtttgaagtccagggtgcaagatgagctctcacctgccttgacaaatgggaaggttcagatcgcagaatactctagcaagcttctgagggcaagtagctctggtgactcgacccctaagcccattcgagtggtaccagcagagcattccgtgccgactccagattatacaagcctgatgaaacagaggacctcatttgtgaccactccagctggtcaggaaacatctgatccagacctagtcgggatgatagctttgcatggttatcctttgtcaattgtggagcacgaagaaatgttgagatttgtaaagaaactcaaccctgtgaagcttttaagcttgacttctgttggtgaagttaggggtgacaccaatacttcattgctaaaggaaatgcttatagagaagaagtgccttcctattggagggacgctattcaatgttgcctgtgtggactatgtccttaacagtattgttttcaaagtgcaagcagatatacttcgtcttgttggtgacatagtaatggattttttagtgtcattgacccagcagcagcttctggaagttatttcacagacgggtctaaagtgtccacaagaagatgctaagtggtggcacaaactttattttagacttgaagtgcttttgcatttcaagaagtcatttccttctgaagaaagggtgtccccagaagatacaaaaactgctgagtccgtttgcaagattttgaggacaatttatcgtgtcattgaagttatttccagccctagctctccgacagcaaatatatattttaacgagatatggaaagtcaggacagttttgcaagaagaagcattaaatgatcacagagaaatagctacagtggctatggtgatgcaggaagcattcaatgagtattggcaaaattcatatttgtggttggccatacctgttgtgctagaccctagattcaaattcagtttcattgagtttcgtctgaaacgagcttttggaacagattcggcaagctacctatctgtaatacgtgaaacagtccgggaactcttcaatgaatactgccattctttgaatcaggcaagtgatgttgtttcaaacagtgaagctttgtgtgcagatgataatgattcgttggaagattgggatcagcatctccatgaacaagcaagtcgtcagctatcttcggagcttgatgattaccttgaagatggtttagttcctagaaaggatgattttgatattttaaactggtggatgactcatagtactaagtacccaacacttgcaactattgcacgggacatcttagccatgccagcatctgctgttcaatctgaagcagcattcagtagcagtggaccagtaattccaaagcaccagagtacattaaacatcagaacaatcgaggcacttgtttgtactcgagattggatgagataa
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| Protein seq | MDHDSLQNTMEHPVPGEEHEEDNSMKVDVAFDGVHSPFRYRHKKRSKVWEEYKPIFLNGKVQFAECLYCHNRLSCKDSNGTSHLWRHQKICPGKEEAAQRRQKDSYFPCVLVNENDPVSPHDPVNDVITETLSDINSVTPSGNRFTSKVWKEFTPVYIEGKLQAADCIHCQKRLSANKFGGRSHLSRHLITCAGRRGRGGGQIHQKGLFYPSSVPSLKSRVQDELSPALTNGKVQIAEYSSKLLRASSSGDSTPKPIRVVPAEHSVPTPDYTSLMKQRTSFVTTPAGQETSDPDLVGMIALHGYPLSIVEHEEMLRFVKKLNPVKLLSLTSVGEVRGDTNTSLLKEMLIEKKCLPIGGTLFNVACVDYVLNSIVFKVQADILRLVGDIVMDFLVSLTQQQLLEVISQTGLKCPQEDAKWWHKLYFRLEVLLHFKKSFPSEERVSPEDTKTAESVCKILRTIYRVIEVISSPSSPTANIYFNEIWKVRTVLQEEALNDHREIATVAMVMQEAFNEYWQNSYLWLAIPVVLDPRFKFSFIEFRLKRAFGTDSASYLSVIRETVRELFNEYCHSLNQASDVVSNSEALCADDNDSLEDWDQHLHEQASRQLSSELDDYLEDGLVPRKDDFDILNWWMTHSTKYPTLATIARDILAMPASAVQSEAAFSSSGPVIPKHQSTLNIRTIEALVCTRDWMR |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0028340 | OsKeNa_04g0028340.02 | Chr04 | 30669589 | 30673374 | - | NAM | ||
| CDS seq | atggatcatgattcactccaaaacactatggagcatcctgttcctggagaggagcatgaggaggataacagcatgaaagtggatgtggcatttgatggagtgcacagcccgttccggtacaggcacaagaaaaggtccaaggtttgggaggagtacaagcccatctttctgaatgggaaggttcagtttgcggagtgtctctactgccataatcgcctcagctgcaaagattccaacggcacaagccatctatggcggcatcagaaaatctgccctggcaaggaggaagcggcgcagaggcgacagaaggattcctacttcccatgcgttttggtgaatgagaacgatccagtttcaccccacgatccggtcaatgatgttattacagagacgcttagtgatataaactcggtaacacccagcggtaacagattcacgtcaaaggtgtggaaggagtttacacctgtctatattgaggggaaactccaggctgcagattgcattcactgccagaagcgcctcagtgcgaataagttcggggggagaagccatctgagtcgacatcttataacctgtgcaggacgacgtggacgtggagggggccaaattcatcagaagggtttattttatccttctagcgtgcctagtttgaagtccagggtgcaagatgagctctcacctgccttgacaaatgggaaggttcagatcgcagaatactctagcaagcttctgagggcaagtagctctggtgactcgacccctaagcccattcgagtggtaccagcagagcattccgtgccgactccagattatacaagcctgatgaaacagaggacctcatttgtgaccactccagctggtcaggaaacatctgatccagacctagtcgggatgatagctttgcatggttatcctttgtcaattgtggagcacgaagaaatgttgagatttgtaaagaaactcaaccctgtgaagcttttaagcttgacttctgttggtgaagttaggggtgacaccaatacttcattgctaaaggaaatgcttatagagaagaagtgccttcctattggagggacgctattcaatgttgcctgtgtggactatgtccttaacagtattgttttcaaagtgcaagcagatatacttcgtcttgttggtgacatagtaatggattttttagtgtcattgacccagcagcagcttctggaagttatttcacagacgggtctaaagtgtccacaagaagatgctaagtggtggcacaaactttattttagacttgaagtgcttttgcatttcaagaagtcatttccttctgaagaaagggtgtccccagaagatacaaaaactgctgagtccgtttgcaagattttgaggacaatttatcgtgtcattgaagttatttccagccctagctctccgacagcaaatatatattttaacgagatatggaaagtcaggacagttttgcaagaagaagcattaaatgatcacagagaaatagctacagtggctatggtgatgcaggaagcattcaatgagtattggcaaaattcatatttgtggttggccatacctgttgtgctagaccctagattcaaattcagtttcattgagtttcgtctgaaacgagcttttggaacagattcggcaagctacctatctgtaatacgtgaaacagtccgggaactcttcaatgaatactgccattctttgaatcaggcaagtgatgttgtttcaaacagtgaagctttgtgtgcagatgataatgattcgttggaagattgggatcagcatctccatgaacaagcaagtcgtcagctatcttcggagcttgatgattaccttgaagatggtttagttcctagaaaggatgattttgatattttaaactggtggatgactcatagtactaagtacccaacacttgcaactattgcacgggacatcttagccatgccagcatctgctgttcaatctgaagcagcattcagtagcagtggaccagtaattccaaagcaccagagtacattaaacatcagaacaatcgaggcacttgtttgtactcgagattggatgagataa
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| Protein seq | MDHDSLQNTMEHPVPGEEHEEDNSMKVDVAFDGVHSPFRYRHKKRSKVWEEYKPIFLNGKVQFAECLYCHNRLSCKDSNGTSHLWRHQKICPGKEEAAQRRQKDSYFPCVLVNENDPVSPHDPVNDVITETLSDINSVTPSGNRFTSKVWKEFTPVYIEGKLQAADCIHCQKRLSANKFGGRSHLSRHLITCAGRRGRGGGQIHQKGLFYPSSVPSLKSRVQDELSPALTNGKVQIAEYSSKLLRASSSGDSTPKPIRVVPAEHSVPTPDYTSLMKQRTSFVTTPAGQETSDPDLVGMIALHGYPLSIVEHEEMLRFVKKLNPVKLLSLTSVGEVRGDTNTSLLKEMLIEKKCLPIGGTLFNVACVDYVLNSIVFKVQADILRLVGDIVMDFLVSLTQQQLLEVISQTGLKCPQEDAKWWHKLYFRLEVLLHFKKSFPSEERVSPEDTKTAESVCKILRTIYRVIEVISSPSSPTANIYFNEIWKVRTVLQEEALNDHREIATVAMVMQEAFNEYWQNSYLWLAIPVVLDPRFKFSFIEFRLKRAFGTDSASYLSVIRETVRELFNEYCHSLNQASDVVSNSEALCADDNDSLEDWDQHLHEQASRQLSSELDDYLEDGLVPRKDDFDILNWWMTHSTKYPTLATIARDILAMPASAVQSEAAFSSSGPVIPKHQSTLNIRTIEALVCTRDWMR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0028340 | OsKeNa_04g0028340.01 | Chr04 | 30669552 | 30673374 | - | NAM | ||
| CDS seq | atggatcatgattcactccaaaacactatggagcatcctgttcctggagaggagcatgaggaggataacagcatgaaagtggatgtggcatttgatggagtgcacagcccgttccggtacaggcacaagaaaaggtccaaggtttgggaggagtacaagcccatctttctgaatgggaaggttcagtttgcggagtgtctctactgccataatcgcctcagctgcaaagattccaacggcacaagccatctatggcggcatcagaaaatctgccctggcaaggaggaagcggcgcagaggcgacagaaggattcctacttcccatgcgttttggtgaatgagaacgatccagtttcaccccacgatccggtcaatgatgttattacagagacgcttagtgatataaactcggtaacacccagcggtaacagattcacgtcaaaggtgtggaaggagtttacacctgtctatattgaggggaaactccaggctgcagattgcattcactgccagaagcgcctcagtgcgaataagttcggggggagaagccatctgagtcgacatcttataacctgtgcaggacgacgtggacgtggagggggccaaattcatcagaagggtttattttatccttctagcgtgcctagtttgaagtccagggtgcaagatgagctctcacctgccttgacaaatgggaaggttcagatcgcagaatactctagcaagcttctgagggcaagtagctctggtgactcgacccctaagcccattcgagtggtaccagcagagcattccgtgccgactccagattatacaagcctgatgaaacagaggacctcatttgtgaccactccagctggtcaggaaacatctgatccagacctagtcgggatgatagctttgcatggttatcctttgtcaattgtggagcacgaagaaatgttgagatttgtaaagaaactcaaccctgtgaagcttttaagcttgacttctgttggtgaagttaggggtgacaccaatacttcattgctaaaggaaatgcttatagagaagaagtgccttcctattggagggacgctattcaatgttgcctgtgtggactatgtccttaacagtattgttttcaaagtgcaagcagatatacttcgtcttgttggtgacatagtaatggattttttagtgtcattgacccagcagcagcttctggaagttatttcacagacgggtctaaagtgtccacaagaagatgctaagtggtggcacaaactttattttagacttgaagtgcttttgcatttcaagaagtcatttccttctgaagaaagggtgtccccagaagatacaaaaactgctgagtccgtttgcaagattttgaggacaatttatcgtgtcattgaagttatttccagccctagctctccgacagcaaatatatattttaacgagatatggaaagtcaggacagttttgcaagaagaagcattaaatgatcacagagaaatagctacagtggctatggtgatgcaggaagcattcaatgagtattggcaaaattcatatttgtggttggccatacctgttgtgctagaccctagattcaaattcagtttcattgagtttcgtctgaaacgagcttttggaacagattcggcaagctacctatctgtaatacgtgaaacagtccgggaactcttcaatgaatactgccattctttgaatcaggcaagtgatgttgtttcaaacagtgaagctttgtgtgcagatgataatgattcgttggaagattgggatcagcatctccatgaacaagcaagtcgtcagctatcttcggagcttgatgattaccttgaagatggtttagttcctagaaaggatgattttgatattttaaactggtggatgactcatagtactaagtacccaacacttgcaactattgcacgggacatcttagccatgccagcatctgctgttcaatctgaagcagcattcagtagcagtggaccagtaattccaaagcaccagagtacattaaacatcagaacaatcgaggcacttgtttgtactcgagattggatgagataa
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| Protein seq | MDHDSLQNTMEHPVPGEEHEEDNSMKVDVAFDGVHSPFRYRHKKRSKVWEEYKPIFLNGKVQFAECLYCHNRLSCKDSNGTSHLWRHQKICPGKEEAAQRRQKDSYFPCVLVNENDPVSPHDPVNDVITETLSDINSVTPSGNRFTSKVWKEFTPVYIEGKLQAADCIHCQKRLSANKFGGRSHLSRHLITCAGRRGRGGGQIHQKGLFYPSSVPSLKSRVQDELSPALTNGKVQIAEYSSKLLRASSSGDSTPKPIRVVPAEHSVPTPDYTSLMKQRTSFVTTPAGQETSDPDLVGMIALHGYPLSIVEHEEMLRFVKKLNPVKLLSLTSVGEVRGDTNTSLLKEMLIEKKCLPIGGTLFNVACVDYVLNSIVFKVQADILRLVGDIVMDFLVSLTQQQLLEVISQTGLKCPQEDAKWWHKLYFRLEVLLHFKKSFPSEERVSPEDTKTAESVCKILRTIYRVIEVISSPSSPTANIYFNEIWKVRTVLQEEALNDHREIATVAMVMQEAFNEYWQNSYLWLAIPVVLDPRFKFSFIEFRLKRAFGTDSASYLSVIRETVRELFNEYCHSLNQASDVVSNSEALCADDNDSLEDWDQHLHEQASRQLSSELDDYLEDGLVPRKDDFDILNWWMTHSTKYPTLATIARDILAMPASAVQSEAAFSSSGPVIPKHQSTLNIRTIEALVCTRDWMR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 30669900 | 30670486 | - | OsKeNa_04g0028340.01 | OsKeNa_04g0028340.01,OsKeNa_04g0028340.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.322403 | 1.722096 | 3.304581 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628400 | RBH | 1.520985 | 2.188767 | 6.761171 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53660 | RBH | 1.016418 | 1.454737 | 1.719494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0628400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027550 | RBH | 0.997823 | 14.929879 | 7.169707 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005490 | RBH | 0.202103 | 1.037550 | 0.948221 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028050 | RBH | 1.502465 | 8.118349 | 10.972941 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027830 | RBH | 0.155189 | 0.321003 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028070 | RBH | 9.750446 | 19.985125 | 20.314541 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0504500 | RBH | 10.034805 | 15.978811 | 21.0648225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026770 | RBH | 0.879092 | 0.620327 | 1.242515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0508500 | RBH | 10.4843335 | 12.6166695 | 36.5681595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027170 | RBH | 0.746404 | 0.090532 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027020 | RBH | 0.360951 | 11.815270 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027050 | RBH | 12.642334 | 38.715221 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027590 | RBH | 1.086425 | 1.221663 | 1.600277 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027680 | RBH | 0.135441 | 7.204219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026970 | RBH | 0.832854 | 4.593558 | 3.433527 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026890 | RBH | 1.711083 | 16.775517 | 10.974536 |
