Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0005490 | OGI:08003760 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:4790267-4793290 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tacgtatgatcttatcttagctttgttgtacttttcctgtgttttgtttaaccacatactgtaaaaataatatgattgtggtgtatctttgtaggcagttatggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcAaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatggtatgcttgctttgtttcccttggggatcatcttgagtttAattggcatctgcatcggtgtattagttgatttgacagtgtgtaaattttgtactgttttatagtcgttgagagagttttggatgatcatcaacttattatggtacccttgtataaagcattcaaactttaacctactttaggcaatgatgataatgattagggacattttaacaatgacaatagttgagggcattgccttttaggtgctgtatattagcttgttggttaaatcaatgataggaattatagggcattcccacttaggtggtatatattttgttatttcttaaaacaatgagaatattttattaatattttgatcccctatcagaggagctgacagaatgggctaggctttagctgatgattttccatgattaagaagatcacataaggaattatatagatatgttaatcagggttcaggtccttactggaaactgctggtaactggtggttaccagcaaccctggccaggagcattgtttgcaaaaaatagtgtgttaaaaaTtttaaatctaaactatgccgtcacaatagtaagagcatcagagtaagctataagttacaaataatttactaatttacctcaaaaccttaaatttttttcatctccgtcaccctgctggtctgcattgctcatagaataactctttttctggcaagatgagtgatacgattgcacatttagtttagcaagagtagaatggctgctaccaaggtggttgaaaagctgcaagttacttggtttattttaggattagatgttccccctgtgggaatttctagtatttttcttcttctgtcaatgccatgggaatttttaaacttctctgctgtatattattttatctgtctgtggctgtaattatggtggaagcatccttttgtttttttttttcggccaagttgcatatctttcatctttatgtgtattctgactaaactatccatgctttatacataatagtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcaggttcagatcaaaggtgtgggaggagtttacgcctgtatatgttgaggggagaatccagggtgctgaatgtctccattgccacaagcgacttagtgcagataaaggtagaagccatttgaaccggcatactcagacttgtccggcacgaggagaaactggaataaatcataagagtccgttttctccctccagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagagtattcaactcttttatatcagaaagaaaaggctgaccttaaggagaaaattgctgcactttcatcccgacggatttccttatcagcaagcatttgggctcctcatggagctgagcccactgtgaagtacatctgtttgacagcgcactttattgatgcagaatggaggcttcaaaggaaaataatcaagtttggtgtgttttggtcgttgcctactgatttggaaagaatgatactttataaggaggcttgtgtattagactctgaaagtgggccatataatgtcatagcagaagctataagtgattggaatcttgataataagctttttagcttgatatctgtcagtgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggAaaaATTCATACCTATGGCTGTCAATACCTATAGTTCTTGATCCCAGATTC
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| CDS seq | atggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcAaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatgtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagatgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggAaaaATTCATACCTATGGCTGTCAATACCTATAGTTCTTGA
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| Protein seq | MDPMDDHDSDELPSGVASDEAHVAFRARTKKRSKVWDEYKPIYVNGVVQSAECRYCHILMSCKGSDGHSNGTSHLWRHQKICRAKEDLDLAQLHDTGFPYVMNDINPVDQIHPDSLDDIKLASHSDNSSAPSFKSGVQDELSPALTNGKVQIAEYASKLLKVNSSVDKTPQSQHILALPARDNMTKEQNTSSTHAAPDVSTSKFDQETSYQELIRMIVLHGYPLSIVEHEEMKRFAKSLNPLFNMASSIDVEDEIRNHEGTTKLKDMLIQKNSLPIRGELYNIACVDDVLNNIVSKGQSMLHLVDNILERFMLAHAYSSLTQQQLFEAVTNMGLKCPQEDAKWWHKIYFRLEVVLHCKKAFPSEELLSAEDYKVVESICKILRAFYRAIEVISGPVCPTANVYFNELWKVRTTLQEEASTDHTEVASMVREMQEAFHEYWEKFIPMAVNTYSS |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0005490 | OsKeNa_08g0005490.01 | Chr08 | 4790267 | 4793290 | + | NAM | ||
| CDS seq | atggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcAaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatgtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagatgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggAaaaATTCATACCTATGGCTGTCAATACCTATAGTTCTTGA
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| Protein seq | MDPMDDHDSDELPSGVASDEAHVAFRARTKKRSKVWDEYKPIYVNGVVQSAECRYCHILMSCKGSDGHSNGTSHLWRHQKICRAKEDLDLAQLHDTGFPYVMNDINPVDQIHPDSLDDIKLASHSDNSSAPSFKSGVQDELSPALTNGKVQIAEYASKLLKVNSSVDKTPQSQHILALPARDNMTKEQNTSSTHAAPDVSTSKFDQETSYQELIRMIVLHGYPLSIVEHEEMKRFAKSLNPLFNMASSIDVEDEIRNHEGTTKLKDMLIQKNSLPIRGELYNIACVDDVLNNIVSKGQSMLHLVDNILERFMLAHAYSSLTQQQLFEAVTNMGLKCPQEDAKWWHKIYFRLEVVLHCKKAFPSEELLSAEDYKVVESICKILRAFYRAIEVISGPVCPTANVYFNELWKVRTTLQEEASTDHTEVASMVREMQEAFHEYWEKFIPMAVNTYSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.202103 | 1.037550 | 0.948221 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0180500 | RBH | 0.775059 | 0.744474 | 2.439815 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08240 | RBH | 0.556467 | 0.425427 | 0.564364 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0180500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006340 | SBH | 0.264181 | 6.892809 | 0.174271 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028340 | RBH | 0.322403 | 1.722096 | 3.304581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006410 | SBH | 1.300694 | 3.236920 | 1.737756 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005500 | RBH | 0.361978 | 0.342623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005210 | RBH | 6.571144 | 5.481733 | 11.848014 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0070300 | RBH | 8.2809065 | 8.927504 | 12.165233 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006040 | SBH | 0.174561 | 0.076271 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0075600 | RBH | 7.4794095 | 12.242655 | 16.9596165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006020 | SBH | 0.117423 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006070 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006000 | SBH | 0.0 | 0.073408 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006210 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006060 | SBH | 0.052826 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006060 | SBH | 0.157720 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005140 | RBH | 0.947337 | 7.223179 | 6.845451 |
