Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006020 | OGI:08003760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5298898-5301764 | ||||||||
| Gene Symbol | WRKY117, OsWRKY117, DLN205, OsDLN205 | ||||||||||
| DNA seq | ttaagataatgtgatattatttccattatctgcatcagctgttcctgtttaatagcatgggatcatttcagttaggcatcatgctccaataaataaatggtccatctgtcattacaattttcataatcaaaagtaaaaggttgtaccagatgatttaataatccaactttgagcacagataagtgcttcagttgtctcagggcccaattttccgttaaatagctctgcccgttgatcactatcgtcattgaatgcagattcagcggaaactgcacatccaggtattgctagaatatcccgtgccattttagcaagagatgggtacgctgctgaattatccttccaccatttcAgaatatcaaaagaatcgttttgaggacagagcccccctccaagatactcaaaaagctctttgaattcctcaagtgcagcttgtgctatggtgtaattcgttctctgtttatgtaatggagcactaatttgtgtacctgaaccattgttgccttgattcagtatctcattactttgctcattaacatgagagtactgaatatagagctcataaaactttgcacgcacctcagagatataggttccagcatcttgactaaaagcttctctgaagcgaagttcaatgaaagcgagcttatatctggggtctagaaccacagctatcgacaaccacaagtaccacttcttccaatggttatcaaattgctcctgcatattcttcactttaataaccctctctatgtttttcattctaggtaattcttttagggttgctcttaagctccatatcacatgaaaatatgaattaaaagtcaagttataagtttcataaaaagctttcgttgcatgatagattgcccttgcaatcttgcaaaagttctctgttgcttccagatcatctaatgatggacgttcactgccatttgaaagtggaaatgatttgatgaactgcaaagcagcctcacaccaatagaatgttaagtaccagtattttgatccaaaagagggacggtctagctgcagctgtgatacaacttcctgacatttcagcttacgctcgggagtgtttgtcatgtaacgagaccacatcgatcgcacctctctcccatcggtgtattgcataagatcatcgaggccatctaccatacaagggatagttaatagcttgcatttggcaacaaggtagttctttccagtcgtaaggtcatcctccaaggatattgtggctttcttatccactgatccctccaatgtcactCctaaaagcttcggctcaagacaccaatctcgaactaccttcttcaacaccatcttgtcaacatcctcataattagcaatttcggattgccagtgtgggaacaagttcaagtctaaacgatccgattctgaaagacaacatcttattgtttttctattaatcttccactcttcatcaataaagtgcActgttaaataaacaattactgtttcataactcccagagtaccacttattcactgacaggaaaactccgccaggtgtagctattattttctccttcagcttcaatttttccttctcgtaaacactaataaacttgtcctcaactgtagtttgtggaaccatattcggagctggatttctacccgccagaaatgacgcaaagcttgcacggtacatggcagggaagggacaaagtttcaggaccgtagccctcataaactcttcaagaggattttcttgaccattttccaagttctgtgaaggattttcttgaccattttccaagttctctgaaacaggtaaatcaggctgtgactgcgaagttgaactccttcgctttttctgcaccctgctggttccagccttttcaggacagatcttcagatgtcggcgtaggtggctggttccatttctagtctctgcaacgagcctgagtttacaatgattacatatggcagtatggagctttccatccttaaacacaagtttaaattccttccacaccttggacttaagttttctcctgtaatcaacatatggtattactactctttatcattatttctctattgaaaccacaacatatgtgcatacgaaaaatcacaaacagagtcatcataaatcaaactaatcaagttttttttatcagtttcacggaacaggggattttttatccaggatttgtaaacggtaaaaaagttgatagatacttctccaacgcgtgcaaaggatgttgagtttgcacaaaagcttggagacagaagaaaagcaagagtatttagggaaaatattgtatcttttttcaattttaaggaggttggggaagtaacaaaagcaaattacctttgcattgcattgggatcaccagcagctgcatcctcgtccatttctacatcaccagcatcgtcttcattcctatcacttgaaccagacgattgatcatctccattttctgtctcaggcaccgaaggtccagccgcagcccctgctgcatctgatgcctcaactagcacaccaacttgagacattggctccagtctatctgactgtcgtagatgattgtgtctgcccctgtaaaatgtttcaacatctgcagtgtatgccactgttttctggaccacacagtttgcttgggcacattgatagtgggataatatcgttggagacgactcaccctgagttgtactctgtccggtcatcctccaatagtagccatcatcatcagctaggcaaatgttaccatgatctgtgtgtgactgctgtgctgcggccacctgaactactgctgtgctgaatgaagaacccacatgctgctgcgcagtagatggcgcggacatcaaggctgagaaggggcggaatccttgatcagccat
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| CDS seq | atggctgatcaaggattccgccccttctcagccttgatgtccgcgccatctactgcgcagcagcatgtgggttcttcattcagcacagcagtagttcaggtggccgcagcacagcagtcacacacagatcatggtaacatttgcctagctgatgatgatggctactattggaggatgaccggacagagtacaactcagggtgagtcgtctccaacgatattatcccactatcaatgtgcccaagcaaactgtgtggtccagaaaacagtggcatacactgcagatgttgaaacattttacaggggcagacacaatcatctacgacagtcagatagactggagccaatgtctcaagttggtgtgctagttgaggcatcagatgcagcaggggctgcggctggaccttcggtgcctgagacagaaaatggagatgatcaatcgtctggttcaagtgataggaatgaagacgatgctggtgatgtagaaatggacgaggatgcagctgctggtgatcccaatgcaatgcaaaggagaaaacttaagtccaaggtgtggaaggaatttaaacttgtgtttaaggatggaaagctccatactgccatatgtaatcattgtaaactcaggctcgttgcagagactagaaatggaaccagccacctacgccgacatctgaagatctgtcctgaaaaggctggaaccagcagggtgcagaaaaagcgaaggagttcaacttcgcagtcacagcctgatttacctgtttcagagaacttggaaaatggtcaagaaaatccttcacagaacttggaaaatggtcaagaaaatcctcttgaagagtttatgagggctacggtcctgaaactttgtcccttccctgccatgtaccgtgcaagctttgcgtcatttctggcgggtagaaatccagctccgaatatggttccacaaactacagttgaggacaagtttattagtgtttacgagaaggaaaaattgaagctgaaggagaaaataatagctacacctggcggagttttcctgtcagtgaataagtggtactctgggagttatgaaacagtaattgtttatttaacagTgcactttattgatgaagagtggaagattaatagaaaaacaataagatgttgtctttcagaatcggatcgtttagacttgaacttgttcccacactggcaatccgaaattgctaattatgaggatgttgacaagatggtgttgaagaaggtagttcgagattggtgtcttgagccgaagcttttagGagtgacattggagggatcagtggataagaaagccacaatatccttggaggatgaccttacgactggaaagaactaccttgttgccaaatgcaagctattaactatcccttgtatggtagatggcctcgatgatcttatgcaatacaccgatgggagagaggtgcgatcgatgtggtctcgttacatgacaaacactcccgagcgtaagctgaaatgtcaggaagttgtatcacagctgcagctagaccgtccctcttttggatcaaaatactggtacttaacattctattggtgtgaggctgctttgcagttcatcaaatcatttccactttcaaatggcagtgaacgtccatcattagatgatctggaagcaacagagaacttttgcaagattgcaagggcaatctatcatgcaacgaaagctttttatgaaacttataacttgacttttaattcatattttcatgtgatatggagcttaagagcaaccctaaaagaattacctagaatgaaaaacatagagagggttattaaagtgaagaatatgcaggagcaatttgataaccattggaagaagtggtacttgtggttgtcgatagctgtggttctagaccccagatataagctcgctttcattgaacttcgcttcagagaagcttttagtcaagatgctggaacctatatctctgaggtgcgtgcaaagttttatgagctctatattcagtactctcatgttaatgagcaaagtaatgagatactgaatcaaggcaacaatggttcaggaacagctgatgcagataatggaaataatatcacattatcttaa
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| Protein seq | MADQGFRPFSALMSAPSTAQQHVGSSFSTAVVQVAAAQQSHTDHGNICLADDDGYYWRMTGQSTTQGESSPTILSHYQCAQANCVVQKTVAYTADVETFYRGRHNHLRQSDRLEPMSQVGVLVEASDAAGAAAGPSVPETENGDDQSSGSSDRNEDDAGDVEMDEDAAAGDPNAMQRRKLKSKVWKEFKLVFKDGKLHTAICNHCKLRLVAETRNGTSHLRRHLKICPEKAGTSRVQKKRRSSTSQSQPDLPVSENLENGQENPSQNLENGQENPLEEFMRATVLKLCPFPAMYRASFASFLAGRNPAPNMVPQTTVEDKFISVYEKEKLKLKEKIIATPGGVFLSVNKWYSGSYETVIVYLTVHFIDEEWKINRKTIRCCLSESDRLDLNLFPHWQSEIANYEDVDKMVLKKVVRDWCLEPKLLGVTLEGSVDKKATISLEDDLTTGKNYLVAKCKLLTIPCMVDGLDDLMQYTDGREVRSMWSRYMTNTPERKLKCQEVVSQLQLDRPSFGSKYWYLTFYWCEAALQFIKSFPLSNGSERPSLDDLEATENFCKIARAIYHATKAFYETYNLTFNSYFHVIWSLRATLKELPRMKNIERVIKVKNMQEQFDNHWKKWYLWLSIAVVLDPRYKLAFIELRFREAFSQDAGTYISEVRAKFYELYIQYSHVNEQSNEILNQGNNGSGTADADNGNNITLS |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006020 | OsLima_08g0006020.01 | Chr08 | 5298898 | 5301764 | - | NAM | ||
| CDS seq | atggctgatcaaggattccgccccttctcagccttgatgtccgcgccatctactgcgcagcagcatgtgggttcttcattcagcacagcagtagttcaggtggccgcagcacagcagtcacacacagatcatggtaacatttgcctagctgatgatgatggctactattggaggatgaccggacagagtacaactcagggtgagtcgtctccaacgatattatcccactatcaatgtgcccaagcaaactgtgtggtccagaaaacagtggcatacactgcagatgttgaaacattttacaggggcagacacaatcatctacgacagtcagatagactggagccaatgtctcaagttggtgtgctagttgaggcatcagatgcagcaggggctgcggctggaccttcggtgcctgagacagaaaatggagatgatcaatcgtctggttcaagtgataggaatgaagacgatgctggtgatgtagaaatggacgaggatgcagctgctggtgatcccaatgcaatgcaaaggagaaaacttaagtccaaggtgtggaaggaatttaaacttgtgtttaaggatggaaagctccatactgccatatgtaatcattgtaaactcaggctcgttgcagagactagaaatggaaccagccacctacgccgacatctgaagatctgtcctgaaaaggctggaaccagcagggtgcagaaaaagcgaaggagttcaacttcgcagtcacagcctgatttacctgtttcagagaacttggaaaatggtcaagaaaatccttcacagaacttggaaaatggtcaagaaaatcctcttgaagagtttatgagggctacggtcctgaaactttgtcccttccctgccatgtaccgtgcaagctttgcgtcatttctggcgggtagaaatccagctccgaatatggttccacaaactacagttgaggacaagtttattagtgtttacgagaaggaaaaattgaagctgaaggagaaaataatagctacacctggcggagttttcctgtcagtgaataagtggtactctgggagttatgaaacagtaattgtttatttaacagTgcactttattgatgaagagtggaagattaatagaaaaacaataagatgttgtctttcagaatcggatcgtttagacttgaacttgttcccacactggcaatccgaaattgctaattatgaggatgttgacaagatggtgttgaagaaggtagttcgagattggtgtcttgagccgaagcttttagGagtgacattggagggatcagtggataagaaagccacaatatccttggaggatgaccttacgactggaaagaactaccttgttgccaaatgcaagctattaactatcccttgtatggtagatggcctcgatgatcttatgcaatacaccgatgggagagaggtgcgatcgatgtggtctcgttacatgacaaacactcccgagcgtaagctgaaatgtcaggaagttgtatcacagctgcagctagaccgtccctcttttggatcaaaatactggtacttaacattctattggtgtgaggctgctttgcagttcatcaaatcatttccactttcaaatggcagtgaacgtccatcattagatgatctggaagcaacagagaacttttgcaagattgcaagggcaatctatcatgcaacgaaagctttttatgaaacttataacttgacttttaattcatattttcatgtgatatggagcttaagagcaaccctaaaagaattacctagaatgaaaaacatagagagggttattaaagtgaagaatatgcaggagcaatttgataaccattggaagaagtggtacttgtggttgtcgatagctgtggttctagaccccagatataagctcgctttcattgaacttcgcttcagagaagcttttagtcaagatgctggaacctatatctctgaggtgcgtgcaaagttttatgagctctatattcagtactctcatgttaatgagcaaagtaatgagatactgaatcaaggcaacaatggttcaggaacagctgatgcagataatggaaataatatcacattatcttaa
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| Protein seq | MADQGFRPFSALMSAPSTAQQHVGSSFSTAVVQVAAAQQSHTDHGNICLADDDGYYWRMTGQSTTQGESSPTILSHYQCAQANCVVQKTVAYTADVETFYRGRHNHLRQSDRLEPMSQVGVLVEASDAAGAAAGPSVPETENGDDQSSGSSDRNEDDAGDVEMDEDAAAGDPNAMQRRKLKSKVWKEFKLVFKDGKLHTAICNHCKLRLVAETRNGTSHLRRHLKICPEKAGTSRVQKKRRSSTSQSQPDLPVSENLENGQENPSQNLENGQENPLEEFMRATVLKLCPFPAMYRASFASFLAGRNPAPNMVPQTTVEDKFISVYEKEKLKLKEKIIATPGGVFLSVNKWYSGSYETVIVYLTVHFIDEEWKINRKTIRCCLSESDRLDLNLFPHWQSEIANYEDVDKMVLKKVVRDWCLEPKLLGVTLEGSVDKKATISLEDDLTTGKNYLVAKCKLLTIPCMVDGLDDLMQYTDGREVRSMWSRYMTNTPERKLKCQEVVSQLQLDRPSFGSKYWYLTFYWCEAALQFIKSFPLSNGSERPSLDDLEATENFCKIARAIYHATKAFYETYNLTFNSYFHVIWSLRATLKELPRMKNIERVIKVKNMQEQFDNHWKKWYLWLSIAVVLDPRYKLAFIELRFREAFSQDAGTYISEVRAKFYELYIQYSHVNEQSNEILNQGNNGSGTADADNGNNITLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.117423 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0198100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09840 | RBH | 1.208772 | 1.308161 | 0.251299 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006340 | RBH | 0.264181 | 6.892809 | 0.174271 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006340 | RBH | 0.0 | 0.000000 | 0.151206 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006410 | RBH | 1.300694 | 3.236920 | 1.737756 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006200 | RBH | 5.622628 | 3.278532 | 3.197437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0086600 | RBH | 3.897408 | 0.930655 | 0.0053675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006040 | RBH | 0.174561 | 0.076271 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0090000 | RBH | 0.644725 | 0.123346 | 0.2065335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006000 | RBH | 0.0 | 0.073408 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006210 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006060 | RBH | 0.052826 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006060 | RBH | 0.157720 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005950 | RBH | 0.0 | 0.0 | 0.000000 |
