Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0005140 | OGI:08003760 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:4352414-4357311 | ||||||||
| Gene Symbol | WRKY105, OsWRKY105 | ||||||||||
| DNA seq | gcttctctccagtctccatccccctctctctcctctgcttccggcggacgcgccgccggccatctccccgccgcctcgccgcctcgcaagcgccaccccgcccgccggcgaagagctttgtgtgcgcggcgttggaccggccttcctttacttgccggaccgaccacgcgcggccggcgagcaggtaggtggaaggagggaggggccccgacgacgcggccggcctcgctccaccggcctccgtctcggttcggctcgaattggaggtattcgctctttctctcgtagctcctccatcctcctactcctccacagcgcttcgcgagcggtgtgtgcctgtgtggcgtagactgtagatctgtcaggatttggattcatctcttccgctccaattcgttgatgagcggtgcagaactaagagcagtttgtttccgaaaaaaatttggggtccagatgttcagttgaactcccgtgtggccttgcccctgtaaattgtggttgaagctcgcaagcactgctaatttgcacaaaatcgtagtcgtatcatctcttgttgggacttctctctgtagactgtagttgaggttgcctgttgtgttaagcttgctgcatgcttcataatcatttacgtatgatcttatcttagctttgttgtacttttcctgtgttttgtttaaccacatactgtaaaaataatatgattgtggtgtatctttgtaggcagttatggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcaaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatggtatgcttgctttgtttcccttggggatcatcttgagtttaattggcatctgcatcggtgtattagttgatttgacagtgtgtaaattttgtactgttttatagtcgttgagagagTtttggatgatcatcaacttattatggtacccttgtataaagcattcaaactttaacctactttaggcaataatgataatgattagggacattttaacaatgacaatagttgagggcattgccttttaggtgctgtatattagcttgttggttaaatcaatgataggaattatagggcattcccacttaggtggtatatattttgttatttcttaaaacaatgacaatattttattaatattttgatcccctatcagaggagctgacagaatgggctaggctttagctgatgaTtttccatgattaagaagatcacataaggaattatatagatatgttaatcagggttcaggtccttactggaaactgctggtaactggtggttaccagcaaccctggccaggagcattgtttgcaaaaaatagtgtgttaaaaattttaaatctaaactataccgtcacaatagtaagagcatcagagtaagctataagttacaaataatttactaatttacctcaaaaccttaaatttttttcatctccgtcaccctgctggtctgcattgctcatagaataactctttttctggcaagatgagtgatacgattgcccatttagtttagcaagagtagaatggctgctaccaaggtggttgaaaagctgcaagttacttggtttattttaggattagatgttccccctgtgggaatttctagtatttttcttcttctgtcaatgccatgggaatttttaaacttctctgctgtatattattttatctgtctgtggctgtaattatggtggaagcatccttttgtttttttttttcggccaagttgcatatctttcatctttatgtgtattctgactaaactatccatgctttatacataatagtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcaggttcagatcaaaggtgtgggaggagtttatgcctgtatatgttgaggggagaatccagggtgctgaatgtctccattgccacaagcgacttagtgcagataaaggtagaagccatttgaaccggcatactcagacttgtccggcacgaggagaaactggaataaatcataagagtccgttttctccctccagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagagtattcaactcttttatatcagaaagaaaaggctgaccttaaggagaaaattgctgcactttcatcccgacggatttccttatcagcaagcatttgggctcctcatggagctgagcccactgtgaagtacatctgtttgacagcgcactttattgatgcagaatggaggcttcaaaggaaaataatcaagtttgGTgtgttttggtcgttgcctactgatttggaaagaatgatactttataaggaggcttgtgtattagactctgaaagtgggccatataatgtcatagcagaagctataagtgattggaatcttgataataagctttttagcttgatatctgtcagtgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggaaaattcatacctatggctgtcaatacctatagttcttgatcccagattcaaaattacttttattgagttccgtcttaaacgagctttcggtgctgaagcagcaaagtatgtagctgctgtacgtgaaataatcagggagctgtttcatgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgatattctgaactggtggatgattcattctacaaagtatccaactctttcagttatggcacaggatgtcttggcaatgccatcatctgctcttcattgcaaggccgccttcagcagtgagggtccagtaattcataagcaatggagcactttgaacatcaagacaattgaggcgcttgtgtgtacccaggattggattagatagaatggtaaattctgcagtcctgagttctgtttgttttccttagctacttatgtgagttcgtttaaataagcatgtgcttgcttcatggttcgtactttacttttgcttcttacttctcgagaaagaattcgacaaacatcttttaggaatgcaaaattaaagtttgtcacagcatcatctcgtagtaggtaggtacttcaaagttcaaaccaatgtagtggtagatagataggttgcaatctgatggatgtgaggcatactgttagcttatgttgtatgtagacatgcttggatcatgactttgcttctaggttggatcgaataaaatcattctgctatattcaaatactgctcagctcatcgaattgctctctttttatctctgtaatgttctaacattagacgttcctgtcaacaattttgcaggctgcatgctgtacaagacatcttgctgctgaagattttcacaaagtacatactcatggtacttctaacctaggaatctaggacactgttggaaagagtttactgctcattcggcttactgtattagacatctagcagatgatagtatgtcttaatatttctgcaattcttctccaaatgtgtatagaactagtcgttcacccgtttgtcatggaatgtgccaaatgtacacctctgggtgttctgatgtatcgtacaatgttatttattgtatcggcatttttaggattataacacagatgtgaatggtagtgccattgagttacta
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| CDS seq | atggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcaaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatgtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcaggttcagatcaaaggtgtgggaggagtttatgcctgtatatgttgaggggagaatccagggtgctgaatgtctccattgccacaagcgacttagtgcagataaaggtagaagccatttgaaccggcatactcagacttgtccggcacgaggagaaactggaataaatcataagagtccgttttctccctccagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagagtattcaactcttttatatcagaaagaaaaggctgaccttaaggagaaaattgctgcactttcatcccgacggatttccttatcagcaagcatttgggctcctcatggagctgagcccactgtgaagtacatctgtttgacagcgcactttattgatgcagaatggaggcttcaaaggaaaataatcaagtttgGTgtgttttggtcgttgcctactgatttggaaagaatgatactttataaggaggcttgtgtattagactctgaaagtgggccatataatgtcatagcagaagctataagtgattggaatcttgataataagctttttagcttgatatctgtcagtgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggaaaattcatacctatggctgtcaatacctatagttcttgatcccagattcaaaattacttttattgagttccgtcttaaacgagctttcggtgctgaagcagcaaagtatgtagctgctgtacgtgaaataatcagggagctgtttcatgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgatattctgaactggtggatgattcattctacaaagtatccaactctttcagttatggcacaggatgtcttggcaatgccatcatctgctcttcattgcaaggccgccttcagcagtgagggtccagtaattcataagcaatggagcactttgaacatcaagacaattgaggcgcttgtgtgtacccaggattggattagatag
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| Protein seq | MDPMDDHDSDELPSGVASDEAHVAFRARTKKRSKVWDEYKPIYVNGVVQSAECRYCHILMSCKGSDGHSNGTSHLWRHQKICRAKEDLDLAQLHDTGFPYVMNDINPVDQIHPDSLDDIKLASHSDNSRFRSKVWEEFMPVYVEGRIQGAECLHCHKRLSADKGRSHLNRHTQTCPARGETGINHKSPFSPSSAPSFKSGVQDELSPALTNGKVQIAEYASKLLKVNSSVDKTPQSQHILALPARDNMTKEQNTSSTHAAPDVSTSKFDQETSYQELIRMIVLHGYPLSIVEHEEMKRFAKSLNPLFNMASSIDVEEYSTLLYQKEKADLKEKIAALSSRRISLSASIWAPHGAEPTVKYICLTAHFIDAEWRLQRKIIKFGVFWSLPTDLERMILYKEACVLDSESGPYNVIAEAISDWNLDNKLFSLISVSEIRNHEGTTKLKDMLIQKNSLPIRGELYNIACVDDVLNNIVSKGQSMLHLVDNILERFMLAHAYSSLTQQQLFEAVTNMGLKCPQEDAKWWHKIYFRLEVVLHCKKAFPSEELLSAEDYKVVESICKILRAFYRAIEVISGPVCPTANVYFNELWKVRTTLQEEASTDHTEVASMVREMQEAFHEYWENSYLWLSIPIVLDPRFKITFIEFRLKRAFGAEAAKYVAAVREIIRELFHEYCGPVDKGVHTSNNEARDVEMDGFDSDSLEDWDQHLSAQSRSQRLSELDNYLEDGLVPRKDDFDILNWWMIHSTKYPTLSVMAQDVLAMPSSALHCKAAFSSEGPVIHKQWSTLNIKTIEALVCTQDWIR |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0005140 | OsNaBo_08g0005140.01 | Chr08 | 4352414 | 4357311 | + | NAM | ||
| CDS seq | atggatcccatggatgatcatgacagtgacgagttgccgtcaggggtggcgtcagatgaagctcacgttgccttcagagcgagaactaagaaaaggtccaaggtgtgggatgagtacaagcctatctatgtaaacggagtggttcaaagcgcggaatgccgctactgccatattctgatgagttgcaaaggttctgatggacattccaatggaacgagtcatttgtggcggcatcagaaaatttgccgggcgaaagaggacttggatctggctcagttacatgatactggtttcccatatgtgatgaatgatattaatccggtggatcaaattcatccagattcacttgatgatataaaattggcaagtcacagtgacaacagcaggttcagatcaaaggtgtgggaggagtttatgcctgtatatgttgaggggagaatccagggtgctgaatgtctccattgccacaagcgacttagtgcagataaaggtagaagccatttgaaccggcatactcagacttgtccggcacgaggagaaactggaataaatcataagagtccgttttctccctccagtgcaccaagttttaaatctggggttcaggatgagctttcacctgccttgacaaacggtaaagttcagattgcagagtatgctagcaaacttctcaaggttaatagctcagttgacaaaactccccagagccagcacattctagctttgccagcacgagacaacatgaccaaagaacaaaatacctcatctactcatgctgctccagatgtaagcaccagtaaatttgatcaggaaacatcttatcaagagctaattagaatgatagttttgcatggatatcccttgtcaatcgtggaacatgaagaaatgaaaagatttgcaaaaagcctcaacccgttgtttaacatggcatcaagcattgatgtggaagagtattcaactcttttatatcagaaagaaaaggctgaccttaaggagaaaattgctgcactttcatcccgacggatttccttatcagcaagcatttgggctcctcatggagctgagcccactgtgaagtacatctgtttgacagcgcactttattgatgcagaatggaggcttcaaaggaaaataatcaagtttgGTgtgttttggtcgttgcctactgatttggaaagaatgatactttataaggaggcttgtgtattagactctgaaagtgggccatataatgtcatagcagaagctataagtgattggaatcttgataataagctttttagcttgatatctgtcagtgaaattagaaaccatgaaggtaccacaaagcttaaggacatgctcatacaaaaaaatagtcttcctattagaggtgagctatacaatattgcctgtgtggatgacgtgcttaacaacattgtttcaaaagggcaatcaatgcttcaccttgttgataatatactagaaagatttatgctggcacatgcgtactcatcgttaactcaacagcaactttttgaagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggaaaattcatacctatggctgtcaatacctatagttcttgatcccagattcaaaattacttttattgagttccgtcttaaacgagctttcggtgctgaagcagcaaagtatgtagctgctgtacgtgaaataatcagggagctgtttcatgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgatattctgaactggtggatgattcattctacaaagtatccaactctttcagttatggcacaggatgtcttggcaatgccatcatctgctcttcattgcaaggccgccttcagcagtgagggtccagtaattcataagcaatggagcactttgaacatcaagacaattgaggcgcttgtgtgtacccaggattggattagatag
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| Protein seq | MDPMDDHDSDELPSGVASDEAHVAFRARTKKRSKVWDEYKPIYVNGVVQSAECRYCHILMSCKGSDGHSNGTSHLWRHQKICRAKEDLDLAQLHDTGFPYVMNDINPVDQIHPDSLDDIKLASHSDNSRFRSKVWEEFMPVYVEGRIQGAECLHCHKRLSADKGRSHLNRHTQTCPARGETGINHKSPFSPSSAPSFKSGVQDELSPALTNGKVQIAEYASKLLKVNSSVDKTPQSQHILALPARDNMTKEQNTSSTHAAPDVSTSKFDQETSYQELIRMIVLHGYPLSIVEHEEMKRFAKSLNPLFNMASSIDVEEYSTLLYQKEKADLKEKIAALSSRRISLSASIWAPHGAEPTVKYICLTAHFIDAEWRLQRKIIKFGVFWSLPTDLERMILYKEACVLDSESGPYNVIAEAISDWNLDNKLFSLISVSEIRNHEGTTKLKDMLIQKNSLPIRGELYNIACVDDVLNNIVSKGQSMLHLVDNILERFMLAHAYSSLTQQQLFEAVTNMGLKCPQEDAKWWHKIYFRLEVVLHCKKAFPSEELLSAEDYKVVESICKILRAFYRAIEVISGPVCPTANVYFNELWKVRTTLQEEASTDHTEVASMVREMQEAFHEYWENSYLWLSIPIVLDPRFKITFIEFRLKRAFGAEAAKYVAAVREIIRELFHEYCGPVDKGVHTSNNEARDVEMDGFDSDSLEDWDQHLSAQSRSQRLSELDNYLEDGLVPRKDDFDILNWWMIHSTKYPTLSVMAQDVLAMPSSALHCKAAFSSEGPVIHKQWSTLNIKTIEALVCTQDWIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.947337 | 7.223179 | 6.845451 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0180500 | RBH | 0.775059 | 0.744474 | 2.439815 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08240 | RBH | 0.556467 | 0.425427 | 0.564364 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0180500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005490 | RBH | 0.202103 | 1.037550 | 0.948221 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006480 | SBH | 0.189194 | 0.000000 | 0.594877 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005500 | RBH | 0.361978 | 0.342623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005210 | RBH | 6.571144 | 5.481733 | 11.848014 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0070300 | RBH | 8.2809065 | 8.927504 | 12.165233 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001520 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0075600 | RBH | 7.4794095 | 12.242655 | 16.9596165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0001610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006060 | SBH | 0.052826 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006060 | SBH | 0.157720 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026890 | RBH | 1.711083 | 16.775517 | 10.974536 |
