Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: NamRoo_Nipponbare_DEL0427100

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-sbtrp: NamRoo | NamRoo

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

31048937

31050155

SV Length:

Query Start:

Query End:

Allele sv Count:

1217 bp

27682950

27684166

6

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
NamRoo_128077_DEL0437760	Chr04	31048937	31050155	26350839	26352055	1217
NamRoo_J4155_DEL0432280	Chr04	31048937	31050155	27220156	27221372	1217
NamRoo_J4155S_DEL0431870	Chr04	31048937	31050155	27788061	27789277	1217
NamRoo_LJ_DEL0425110	Chr04	31048937	31050155	27071688	27072904	1217
NamRoo_Nipponbare_DEL0427100	Chr04	31048937	31050155	27682950	27684166	1217
NamRoo_ZH11_DEL0425470	Chr04	31048937	31050155	27229813	27231029	1217

>NamRoo_Nipponbare_DEL0427100
CACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA