Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Oglab_016865 | OGI:04082720 | 45/50 | Os O.glaberrima: Ogla | OglaRS2 | DIADE | Chr04:24354668-24356360 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | TM_OglaRS2_DEL0465580,Y3551_OglaRS2_DEL0470200,R498_OglaRS2_DEL0467850,R527_OglaRS2_DEL0469890,127742_OglaRS2_DEL0472070,S548_OglaRS2_DEL0469110,D62_OglaRS2_DEL0469130,YX1_OglaRS2_DEL0466860,125827_OglaRS2_DEL0468870,DG_OglaRS2_DEL0445370,DG_OglaRS2_DEL0445390,DG_OglaRS2_DEL0472520,Tumba_OglaRS2_DEL0468150,LK638S_OglaRS2_DEL0444230,LK638S_OglaRS2_DEL0444250,LK638S_OglaRS2_DEL0473070,CN1_OglaRS2_DEL0470190,IR64_OglaRS2_DEL0462710,132424_OglaRS2_DEL0441340,132424_OglaRS2_DEL0441360,132424_OglaRS2_DEL0468350,132424_OglaRS2_OTH0468360,FS32_OglaRS2_DEL0439260,FS32_OglaRS2_DEL0439280,FS32_OglaRS2_DEL0467050,WSSM_OglaRS2_DEL0470790,117534_OglaRS2_DEL0439310,117534_OglaRS2_DEL0439330,117534_OglaRS2_DEL0466500,ZS97RS3_OglaRS2_DEL0444690,ZS97RS3_OglaRS2_DEL0444710,ZS97RS3_OglaRS2_DEL0473800,MH63RS3_OglaRS2_DEL0469670,XL628S_OglaRS2_DEL0445020,XL628S_OglaRS2_DEL0445040,XL628S_OglaRS2_DEL0473640,R9311_OglaRS2_DEL0470730,FH838_OglaRS2_DEL0442120,FH838_OglaRS2_DEL0442140,FH838_OglaRS2_DEL0472710,127652_OglaRS2_DEL0441140,127652_OglaRS2_DEL0441160,127652_OglaRS2_DEL0471740,G46_OglaRS2_DEL0441260,G46_OglaRS2_DEL0441280,G46_OglaRS2_DEL0467980,HZ_OglaRS2_DEL0473190,G8_OglaRS2_DEL0471270,II32_OglaRS2_DEL0443440,II32_OglaRS2_DEL0443460,II32_OglaRS2_DEL0472020,127564_OglaRS2_DEL0474660,G630_OglaRS2_DEL0469640,127518_OglaRS2_DEL0465270,
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| DNA seq | CACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTTGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCCAGATCGGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTGCGGCTGCACGCGTCCGTGCGCGGCGTCTCAAGGTCTAGCTCGCCGTTGACCATGCAGCCCCCGAACGGTGGCGAGCGGGGGCACGGCAATCCGGGTCGCCGCCGTGGATCTTCAAGGTATGTGTGCCTGCTCCCGTCCTTCTTCAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTTCAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTTATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCATGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGATTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATATTTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTACACCTTATGTAATGGATACTATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACAATGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGT
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| CDS seq | MLHRRARRWLHWPFVGSSAMVVAAFRRDLGDQKREGDRQSSVFTRSLQPRRRRPVLRLHASVRGVSRSSSPLTMQPPNGGERGHGNPGRRRGSSSMDNVPRGKPVILISDSEDDDDEVYQSVRKCSIERGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN |
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| Protein seq | MLHRRARRWLHWPFVGSSAMVVAAFRRDLGDQKREGDRQSSVFTRSLQPRRRRPVLRLHASVRGVSRSSSPLTMQPPNGGERGHGNPGRRRGSSSMDNVPRGKPVILISDSEDDDDEVYQSVRKCSIERGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN |
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| Function | B3 domain-containing protein Os03g0164300 [UniProtKB/Swiss-Prot:B7EIH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Oglab_016865 | Oglab_016865-RA | Chr04 | 24354668 | 24356360 | + | ensembl | ||
| CDS seq | ATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTGCGGCTGCACGCGTCCGTGCGCGGCGTCTCAAGGTCTAGCTCGCCGTTGACCATGCAGCCCCCGAACGGTGGCGAGCGGGGGCACGGCAATCCGGGTCGCCGCCGTGGATCTTCAAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGATGATGATGAAGTTTATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAG
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| Protein seq | MLHRRARRWLHWPFVGSSAMVVAAFRRDLGDQKREGDRQSSVFTRSLQPRRRRPVLRLHASVRGVSRSSSPLTMQPPNGGERGHGNPGRRRGSSSMDNVPRGKPVILISDSEDDDDEVYQSVRKCSIERGSTGMGLNMQYKIAHIAVSNLPTIPLYVYEIQMTNLTKGKMAFSLPFSKQYINNHLSTPIDDLLVTLVGSAESFEMRLKKSKDKRATFTTRWNKLVQANLFELGDVCVFLFTEVDDDLCITLEVLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0510000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0510000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0436000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0437500 | RBH | 0 | 0.005935 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G006840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0006970 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0283800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0277900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0259900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0277800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0407405500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0416655500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414161700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | OsDGG0408247300.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0409206900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0408231900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0408186900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0407326300.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0408670500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0415771300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409435100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409337500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0407397300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0407389900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409163500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0409044900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0420368100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411812500.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0407303100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0407334700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408816100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0408627300.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0412433900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
