Variation ID: 117534_OglaRS2_DEL0439310

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os cA1: N22 | OsN22RS2
Os O.glaberrima: OglaRS2 | OglaRS2
Chr04
12564740
12565323
SV Length:
Query Start:
Query End:
Allele sv Count:
584 bp
24354508
24355091
39
Gene_id Chromosome Start End
Oglab_016865 Chr04 24354667 24356360
SV_id Chromosome ref_start ref_end query_start query_end length
117534_02428_DEL0434260 Chr04 12564740 12565135 28068477 28068872 396
117534_117425_DEL0427810 Chr04 12564740 12565135 26487702 26488097 396
117534_125619_DEL0426720 Chr04 12564740 12565135 28674152 28674547 396
117534_125827_DEL0426440 Chr04 12564740 12565135 29653418 29653813 396
117534_127518_DEL0428040 Chr04 12564740 12565135 28876461 28876856 396
117534_127564_DEL0427200 Chr04 12564740 12565135 29152580 29152975 396
117534_127742_DEL0424630 Chr04 12564740 12565135 28906285 28906680 396
117534_128077_DEL0429980 Chr04 12564740 12565135 26347621 26348016 396
117534_132278_DEL0434740 Chr04 12564740 12565135 27552536 27552931 396
117534_Azucena_DEL0431970 Chr04 12564740 12565135 26269930 26270325 396
117534_Basmati1_DEL0429530 Chr04 12564740 12565135 26037459 26037854 396
117534_CN1_DEL0426470 Chr04 12564740 12565135 28303555 28303950 396
117534_D62_DEL0425650 Chr04 12564740 12565135 28336112 28336507 396
117534_DHX2_DEL0434670 Chr04 12564740 12565135 26940689 26941084 396
117534_G630_DEL0426050 Chr04 12564740 12565135 28918030 28918425 396
117534_G8_DEL0423700 Chr04 12564740 12565135 28615502 28615897 396
117534_HZ_DEL0424390 Chr04 12564740 12565135 29077952 29078347 396
117534_IR64_DEL0421800 Chr04 12564740 12565135 27263808 27264203 396
117534_J4155_DEL0433250 Chr04 12564740 12565135 27216938 27217333 396
117534_J4155S_DEL0434370 Chr04 12564740 12565135 27784843 27785238 396
117534_Kosh_DEL0435690 Chr04 12564740 12565135 27737222 27737617 396
117534_KY131_DEL0435730 Chr04 12564740 12565135 28165798 28166193 396
117534_Lemont_DEL0433890 Chr04 12564740 12565135 27069959 27070354 396
117534_LJ_DEL0435230 Chr04 12564740 12565135 27068470 27068865 396
117534_NamRoo_DEL0435340 Chr04 12564740 12565135 28024669 28025064 396
117534_Nipponbare_DEL0434410 Chr04 12564740 12565135 27679732 27680127 396
117534_R498_DEL0426260 Chr04 12564740 12565135 27798469 27798864 396
117534_R527_DEL0428110 Chr04 12564740 12565135 28379130 28379525 396
117534_R9311_DEL0425290 Chr04 12564740 12565135 28987040 28987433 394
117534_S548_DEL0428170 Chr04 12564740 12565135 27860187 27860582 396
117534_TM_DEL0425000 Chr04 12564740 12565135 27024824 27025219 396
117534_Tumba_DEL0427540 Chr04 12564740 12565135 29345900 29346295 396
117534_WSSM_DEL0424380 Chr04 12564740 12565135 28467208 28467603 396
117534_Y3551_DEL0429430 Chr04 12564740 12565135 29139593 29139988 396
117534_Y58S_DEL0425600 Chr04 12564740 12565135 28875648 28876043 396
117534_YX1_DEL0421890 Chr04 12564740 12565135 27361865 27362260 396
117534_ZH11_DEL0435240 Chr04 12564740 12565135 27226595 27226990 396
117534_OglaRS2_DEL0439310 Chr04 12564740 12565323 24354508 24355091 584
117534_MH63RS3_DEL0429570 Chr04 12564740 12565135 29399278 29399673 396

>117534_OglaRS2_DEL0439310
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTTGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCCAGATCGGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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