Variation ID: ZS97RS3_OglaRS2_DEL0444690

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-1A: Zhenshan 97 | ZS97RS3
Os O.glaberrima: OglaRS2 | OglaRS2
Chr04
14178156
14178739
SV Length:
Query Start:
Query End:
Allele sv Count:
584 bp
24354508
24355091
39
Gene_id Chromosome Start End
Oglab_016865 Chr04 24354667 24356360
SV_id Chromosome ref_start ref_end query_start query_end length
ZS97RS3_02428_DEL0438090 Chr04 14178156 14178555 28068477 28068876 400
ZS97RS3_117425_DEL0426970 Chr04 14178156 14178555 26487702 26488101 400
ZS97RS3_125619_DEL0415350 Chr04 14178156 14178555 28674152 28674551 400
ZS97RS3_125827_DEL0421450 Chr04 14178156 14178555 29653418 29653817 400
ZS97RS3_127518_DEL0414420 Chr04 14178156 14178555 28876461 28876860 400
ZS97RS3_127564_DEL0430080 Chr04 14178156 14178555 29152580 29152979 400
ZS97RS3_127742_DEL0410530 Chr04 14178156 14178555 28906285 28906684 400
ZS97RS3_128077_DEL0431680 Chr04 14178156 14178555 26347621 26348020 400
ZS97RS3_132278_DEL0438170 Chr04 14178156 14178555 27552536 27552935 400
ZS97RS3_Azucena_DEL0436030 Chr04 14178156 14178555 26269930 26270329 400
ZS97RS3_Basmati1_DEL0434370 Chr04 14178156 14178555 26037459 26037858 400
ZS97RS3_CN1_DEL0426820 Chr04 14178156 14178555 28303555 28303954 400
ZS97RS3_D62_DEL0416590 Chr04 14178156 14178555 28336112 28336511 400
ZS97RS3_DHX2_DEL0436340 Chr04 14178156 14178555 26940689 26941088 400
ZS97RS3_G630_DEL0413290 Chr04 14178156 14178555 28918030 28918429 400
ZS97RS3_G8_DEL0405780 Chr04 14178156 14178555 28615502 28615901 400
ZS97RS3_HZ_DEL0410600 Chr04 14178156 14178555 29077952 29078351 400
ZS97RS3_IR64_DEL0425960 Chr04 14178156 14178555 27263808 27264207 400
ZS97RS3_J4155_DEL0434250 Chr04 14178156 14178555 27216938 27217337 400
ZS97RS3_J4155S_DEL0435080 Chr04 14178156 14178555 27784843 27785242 400
ZS97RS3_Kosh_DEL0439170 Chr04 14178156 14178555 27737222 27737621 400
ZS97RS3_KY131_DEL0436520 Chr04 14178156 14178555 28165798 28166197 400
ZS97RS3_Lemont_DEL0436480 Chr04 14178156 14178555 27069959 27070358 400
ZS97RS3_LJ_DEL0437810 Chr04 14178156 14178555 27068470 27068869 400
ZS97RS3_NamRoo_DEL0438930 Chr04 14178156 14178555 28024669 28025068 400
ZS97RS3_Nipponbare_DEL0437090 Chr04 14178156 14178555 27679732 27680131 400
ZS97RS3_R498_DEL0418440 Chr04 14178156 14178555 27798469 27798868 400
ZS97RS3_R527_DEL0418310 Chr04 14178156 14178555 28379130 28379529 400
ZS97RS3_R9311_DEL0412080 Chr04 14178156 14178555 28987040 28987437 398
ZS97RS3_S548_DEL0418790 Chr04 14178156 14178555 27860187 27860586 400
ZS97RS3_TM_DEL0425290 Chr04 14178156 14178555 27024824 27025223 400
ZS97RS3_Tumba_DEL0428380 Chr04 14178156 14178555 29345900 29346299 400
ZS97RS3_WSSM_DEL0412840 Chr04 14178156 14178555 28467208 28467607 400
ZS97RS3_Y3551_DEL0419600 Chr04 14178156 14178555 29139593 29139992 400
ZS97RS3_Y58S_DEL0419930 Chr04 14178156 14178555 28875648 28876047 400
ZS97RS3_YX1_DEL0416700 Chr04 14178156 14178555 27361865 27362264 400
ZS97RS3_ZH11_DEL0437800 Chr04 14178156 14178555 27226595 27226994 400
ZS97RS3_OglaRS2_DEL0444690 Chr04 14178156 14178739 24354508 24355091 584
ZS97RS3_MH63RS3_DEL0419730 Chr04 14178156 14178555 29399278 29399677 400

>ZS97RS3_OglaRS2_DEL0444690
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTTGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCCAGATCGGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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