Variation ID: XL628S_OglaRS2_DEL0445020

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-adm: Xiangling628S | XL628S
Os O.glaberrima: OglaRS2 | OglaRS2
Chr04
14053870
14054453
SV Length:
Query Start:
Query End:
Allele sv Count:
584 bp
24354508
24355091
39
Gene_id Chromosome Start End
Oglab_016865 Chr04 24354667 24356360
SV_id Chromosome ref_start ref_end query_start query_end length
XL628S_02428_DEL0437320 Chr04 14053870 14054269 28068477 28068876 400
XL628S_117425_DEL0429820 Chr04 14053870 14054269 26487702 26488101 400
XL628S_125619_DEL0424080 Chr04 14053870 14054269 28674152 28674551 400
XL628S_125827_DEL0422450 Chr04 14053870 14054269 29653418 29653817 400
XL628S_127518_DEL0421700 Chr04 14053870 14054269 28876461 28876860 400
XL628S_127564_DEL0421740 Chr04 14053870 14054269 29152580 29152979 400
XL628S_127742_DEL0419020 Chr04 14053870 14054269 28906285 28906684 400
XL628S_128077_DEL0435130 Chr04 14053870 14054269 26347621 26348020 400
XL628S_132278_DEL0437250 Chr04 14053870 14054269 27552536 27552935 400
XL628S_Azucena_DEL0437060 Chr04 14053870 14054269 26269930 26270329 400
XL628S_Basmati1_DEL0435330 Chr04 14053870 14054269 26037459 26037858 400
XL628S_CN1_DEL0417510 Chr04 14053870 14054269 28303555 28303954 400
XL628S_D62_DEL0422160 Chr04 14053870 14054269 28336112 28336511 400
XL628S_DHX2_DEL0438220 Chr04 14053870 14054269 26940689 26941088 400
XL628S_G630_DEL0416910 Chr04 14053870 14054269 28918030 28918429 400
XL628S_G8_DEL0415370 Chr04 14053870 14054269 28615502 28615901 400
XL628S_HZ_DEL0419180 Chr04 14053870 14054269 29077952 29078351 400
XL628S_IR64_DEL0421740 Chr04 14053870 14054269 27263808 27264207 400
XL628S_J4155_DEL0434720 Chr04 14053870 14054269 27216938 27217337 400
XL628S_J4155S_DEL0435980 Chr04 14053870 14054269 27784843 27785242 400
XL628S_Kosh_DEL0438890 Chr04 14053870 14054269 27737222 27737621 400
XL628S_KY131_DEL0438310 Chr04 14053870 14054269 28165798 28166197 400
XL628S_Lemont_DEL0437410 Chr04 14053870 14054269 27069959 27070358 400
XL628S_LJ_DEL0439570 Chr04 14053870 14054269 27068470 27068869 400
XL628S_NamRoo_DEL0438230 Chr04 14053870 14054269 28024669 28025068 400
XL628S_Nipponbare_DEL0438830 Chr04 14053870 14054269 27679732 27680131 400
XL628S_R498_DEL0427130 Chr04 14053870 14054269 27798469 27798868 400
XL628S_R527_DEL0428470 Chr04 14053870 14054269 28379130 28379529 400
XL628S_R9311_DEL0421860 Chr04 14053870 14054269 28987040 28987437 398
XL628S_S548_DEL0428120 Chr04 14053870 14054269 27860187 27860586 400
XL628S_TM_DEL0418580 Chr04 14053870 14054269 27024824 27025223 400
XL628S_Tumba_DEL0421960 Chr04 14053870 14054269 29345900 29346299 400
XL628S_WSSM_DEL0419150 Chr04 14053870 14054269 28467208 28467607 400
XL628S_Y3551_DEL0429620 Chr04 14053870 14054269 29139593 29139992 400
XL628S_Y58S_DEL0427500 Chr04 14053870 14054269 28875648 28876047 400
XL628S_YX1_DEL0425480 Chr04 14053870 14054269 27361865 27362264 400
XL628S_ZH11_DEL0438500 Chr04 14053870 14054269 27226595 27226994 400
XL628S_OglaRS2_DEL0445020 Chr04 14053870 14054453 24354508 24355091 584
XL628S_MH63RS3_DEL0429580 Chr04 14053870 14054269 29399278 29399677 400

>XL628S_OglaRS2_DEL0445020
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTTGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCCAGATCGGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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