Variation ID: G46_OglaRS2_DEL0441260

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-1A: G46 | G46
Os O.glaberrima: OglaRS2 | OglaRS2
Chr04
13555842
13556425
SV Length:
Query Start:
Query End:
Allele sv Count:
584 bp
24354508
24355091
39
Gene_id Chromosome Start End
Oglab_016865 Chr04 24354667 24356360
SV_id Chromosome ref_start ref_end query_start query_end length
G46_02428_DEL0436010 Chr04 13555842 13556241 28068477 28068876 400
G46_117425_DEL0429820 Chr04 13555842 13556241 26487702 26488101 400
G46_125619_DEL0423090 Chr04 13555842 13556241 28674152 28674551 400
G46_125827_DEL0421850 Chr04 13555842 13556241 29653418 29653817 400
G46_127518_DEL0423540 Chr04 13555842 13556241 28876461 28876860 400
G46_127564_DEL0419680 Chr04 13555842 13556241 29152580 29152979 400
G46_127742_DEL0424420 Chr04 13555842 13556241 28906285 28906684 400
G46_128077_DEL0432430 Chr04 13555842 13556241 26347621 26348020 400
G46_132278_DEL0436150 Chr04 13555842 13556241 27552536 27552935 400
G46_Azucena_DEL0434970 Chr04 13555842 13556241 26269930 26270329 400
G46_Basmati1_DEL0434010 Chr04 13555842 13556241 26037459 26037858 400
G46_CN1_DEL0411390 Chr04 13555842 13556241 28303555 28303954 400
G46_D62_DEL0417280 Chr04 13555842 13556241 28336112 28336511 400
G46_DHX2_DEL0437520 Chr04 13555842 13556241 26940689 26941088 400
G46_G630_DEL0417760 Chr04 13555842 13556241 28918030 28918429 400
G46_G8_DEL0421210 Chr04 13555842 13556241 28615502 28615901 400
G46_HZ_DEL0424330 Chr04 13555842 13556241 29077952 29078351 400
G46_IR64_DEL0420490 Chr04 13555842 13556241 27263808 27264207 400
G46_J4155_DEL0432940 Chr04 13555842 13556241 27216938 27217337 400
G46_J4155S_DEL0434580 Chr04 13555842 13556241 27784843 27785242 400
G46_Kosh_DEL0437500 Chr04 13555842 13556241 27737222 27737621 400
G46_KY131_DEL0437890 Chr04 13555842 13556241 28165798 28166197 400
G46_Lemont_DEL0435060 Chr04 13555842 13556241 27069959 27070358 400
G46_LJ_DEL0437160 Chr04 13555842 13556241 27068470 27068869 400
G46_NamRoo_DEL0436550 Chr04 13555842 13556241 28024669 28025068 400
G46_Nipponbare_DEL0437090 Chr04 13555842 13556241 27679732 27680131 400
G46_R498_DEL0424550 Chr04 13555842 13556241 27798469 27798868 400
G46_R527_DEL0425880 Chr04 13555842 13556241 28379130 28379529 400
G46_R9311_DEL0424400 Chr04 13555842 13556241 28987040 28987437 398
G46_S548_DEL0426020 Chr04 13555842 13556241 27860187 27860586 400
G46_TM_DEL0416660 Chr04 13555842 13556241 27024824 27025223 400
G46_Tumba_DEL0419230 Chr04 13555842 13556241 29345900 29346299 400
G46_WSSM_DEL0424800 Chr04 13555842 13556241 28467208 28467607 400
G46_Y3551_DEL0426890 Chr04 13555842 13556241 29139593 29139992 400
G46_Y58S_DEL0424630 Chr04 13555842 13556241 28875648 28876047 400
G46_YX1_DEL0425020 Chr04 13555842 13556241 27361865 27362264 400
G46_ZH11_DEL0437220 Chr04 13555842 13556241 27226595 27226994 400
G46_OglaRS2_DEL0441260 Chr04 13555842 13556425 24354508 24355091 584
G46_MH63RS3_DEL0427120 Chr04 13555842 13556241 29399278 29399677 400

>G46_OglaRS2_DEL0441260
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTTGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCCAGATCGGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGTGAGCTCGGAGGTTTCTATGCTACATCGGCGAGCTCGAAGATGGTTGCATTGGCCGTTCGTCGGGAGCTCGGCGATGGTTGTGGCGGCGTTTCGTCGGGATCTCGGTGACCAAAAGCGGGAGGGAGATAGGCAGTCTTCAGTCTTCACTCGTTCCCTCCAGCCCAGGCGTCGCCGTCCAGTGCTG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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