Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: G46_127518_DEL0423540

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: G46 | G46

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Chr04

13555842

13556241

SV Length:

Query Start:

Query End:

Allele sv Count:

400 bp

28876461

28876860

39

Gene_id	Chromosome	Start	End
OsKYG_04g0021830	Chr04	28876755	28885779

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
G46_02428_DEL0436010	Chr04	13555842	13556241	28068477	28068876	400
G46_117425_DEL0429820	Chr04	13555842	13556241	26487702	26488101	400
G46_125619_DEL0423090	Chr04	13555842	13556241	28674152	28674551	400
G46_125827_DEL0421850	Chr04	13555842	13556241	29653418	29653817	400
G46_127518_DEL0423540	Chr04	13555842	13556241	28876461	28876860	400
G46_127564_DEL0419680	Chr04	13555842	13556241	29152580	29152979	400
G46_127742_DEL0424420	Chr04	13555842	13556241	28906285	28906684	400
G46_128077_DEL0432430	Chr04	13555842	13556241	26347621	26348020	400
G46_132278_DEL0436150	Chr04	13555842	13556241	27552536	27552935	400
G46_Azucena_DEL0434970	Chr04	13555842	13556241	26269930	26270329	400
G46_Basmati1_DEL0434010	Chr04	13555842	13556241	26037459	26037858	400
G46_CN1_DEL0411390	Chr04	13555842	13556241	28303555	28303954	400
G46_D62_DEL0417280	Chr04	13555842	13556241	28336112	28336511	400
G46_DHX2_DEL0437520	Chr04	13555842	13556241	26940689	26941088	400
G46_G630_DEL0417760	Chr04	13555842	13556241	28918030	28918429	400
G46_G8_DEL0421210	Chr04	13555842	13556241	28615502	28615901	400
G46_HZ_DEL0424330	Chr04	13555842	13556241	29077952	29078351	400
G46_IR64_DEL0420490	Chr04	13555842	13556241	27263808	27264207	400
G46_J4155_DEL0432940	Chr04	13555842	13556241	27216938	27217337	400
G46_J4155S_DEL0434580	Chr04	13555842	13556241	27784843	27785242	400
G46_Kosh_DEL0437500	Chr04	13555842	13556241	27737222	27737621	400
G46_KY131_DEL0437890	Chr04	13555842	13556241	28165798	28166197	400
G46_Lemont_DEL0435060	Chr04	13555842	13556241	27069959	27070358	400
G46_LJ_DEL0437160	Chr04	13555842	13556241	27068470	27068869	400
G46_NamRoo_DEL0436550	Chr04	13555842	13556241	28024669	28025068	400
G46_Nipponbare_DEL0437090	Chr04	13555842	13556241	27679732	27680131	400
G46_R498_DEL0424550	Chr04	13555842	13556241	27798469	27798868	400
G46_R527_DEL0425880	Chr04	13555842	13556241	28379130	28379529	400
G46_R9311_DEL0424400	Chr04	13555842	13556241	28987040	28987437	398
G46_S548_DEL0426020	Chr04	13555842	13556241	27860187	27860586	400
G46_TM_DEL0416660	Chr04	13555842	13556241	27024824	27025223	400
G46_Tumba_DEL0419230	Chr04	13555842	13556241	29345900	29346299	400
G46_WSSM_DEL0424800	Chr04	13555842	13556241	28467208	28467607	400
G46_Y3551_DEL0426890	Chr04	13555842	13556241	29139593	29139992	400
G46_Y58S_DEL0424630	Chr04	13555842	13556241	28875648	28876047	400
G46_YX1_DEL0425020	Chr04	13555842	13556241	27361865	27362264	400
G46_ZH11_DEL0437220	Chr04	13555842	13556241	27226595	27226994	400
G46_OglaRS2_DEL0441260	Chr04	13555842	13556425	24354508	24355091	584
G46_MH63RS3_DEL0427120	Chr04	13555842	13556241	29399278	29399677	400

>G46_127518_DEL0423540
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCATGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTGGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGACTAGATCGGGGATGGGTGGAGGTCATTAGCGCCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGTGGCGGCGATTCATCGGCGACGGT