Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: YX1_Nipponbare_INS0448130

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: YX1 | YX1

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

26475487

26476132

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

11

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
YX1_117425_INS0441170	Chr04	26475487	26476132	26492135	26492776	642
YX1_125619_INS0431960	Chr04	26475487	26476132	28678585	28679226	642
YX1_128077_INS0442760	Chr04	26475487	26476132	26352054	26352695	642
YX1_132278_INS0449150	Chr04	26475487	26476132	27556969	27557610	642
YX1_Azucena_INS0444490	Chr04	26475487	26476132	26274363	26275004	642
YX1_J4155_INS0441930	Chr04	26475487	26476132	27221371	27222012	642
YX1_J4155S_INS0444240	Chr04	26475487	26476132	27789276	27789917	642
YX1_LJ_INS0449950	Chr04	26475487	26476132	27072903	27073544	642
YX1_NamRoo_INS0450350	Chr04	26475487	26476132	28029097	28029738	642
YX1_Nipponbare_INS0448130	Chr04	26475487	26476132	27684165	27684806	642
YX1_ZH11_INS0448780	Chr04	26475487	26476132	27231028	27231669	642

>YX1_Nipponbare_INS0448130
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA