Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R9311_Nipponbare_DEL0446460

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI: R9311 | R9311

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

20327164

20327806

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

8

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R9311_02428_DEL0447520	Chr04	20327164	20327806	28072909	28073550	642
R9311_117425_DEL0442280	Chr04	20327164	20327806	26492135	26492776	642
R9311_Azucena_DEL0445950	Chr04	20327164	20327806	26274363	26275004	642
R9311_Basmati1_DEL0444480	Chr04	20327164	20327806	26041891	26042532	642
R9311_DHX2_DEL0448590	Chr04	20327164	20327806	26945121	26945762	642
R9311_Kosh_DEL0449580	Chr04	20327164	20327806	27741655	27742296	642
R9311_Lemont_DEL0446440	Chr04	20327164	20327806	27074392	27075033	642
R9311_Nipponbare_DEL0446460	Chr04	20327164	20327806	27684165	27684806	642

>R9311_Nipponbare_DEL0446460
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA