Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R498_Nipponbare_INS0447470

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1B: R498 | R498

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

26912111

26912756

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

18

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R498_02428_INS0451060	Chr04	26912111	26912756	28072909	28073550	642
R498_117425_INS0442770	Chr04	26912111	26912756	26492135	26492776	642
R498_125619_INS0436490	Chr04	26912111	26912756	28678585	28679226	642
R498_128077_INS0446200	Chr04	26912111	26912756	26352054	26352695	642
R498_132278_INS0449450	Chr04	26912111	26912756	27556969	27557610	642
R498_Azucena_INS0444760	Chr04	26912111	26912756	26274363	26275004	642
R498_Basmati1_INS0450070	Chr04	26912111	26912756	26041891	26042532	642
R498_DHX2_INS0448200	Chr04	26912111	26912756	26945121	26945762	642
R498_J4155_INS0442050	Chr04	26912111	26912756	27221371	27222012	642
R498_J4155S_INS0443970	Chr04	26912111	26912756	27789276	27789917	642
R498_Kosh_INS0447850	Chr04	26912111	26912756	27741655	27742296	642
R498_KY131_INS0445910	Chr04	26912111	26912756	28170231	28170872	642
R498_Lemont_INS0443310	Chr04	26912111	26912756	27074392	27075033	642
R498_LJ_INS0450380	Chr04	26912111	26912756	27072903	27073544	642
R498_NamRoo_INS0451120	Chr04	26912111	26912756	28029097	28029738	642
R498_Nipponbare_INS0447470	Chr04	26912111	26912756	27684165	27684806	642
R498_Y58S_INS0425040	Chr04	26912111	26912756	28880081	28880722	642
R498_ZH11_INS0448560	Chr04	26912111	26912756	27231028	27231669	642

>R498_Nipponbare_INS0447470
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA