Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_Nipponbare_INS0460340

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1A: Zhenshan 97 | ZS97RS3

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

33404692

33405332

SV Length:

Query Start:

Query End:

Allele sv Count:

640 bp

27684167

27684806

18

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_02428_INS0462060	Chr04	33404692	33405332	28072911	28073550	640
ZS97RS3_117425_INS0448050	Chr04	33404692	33405332	26492137	26492776	640
ZS97RS3_125619_INS0435450	Chr04	33404692	33405332	28678587	28679226	640
ZS97RS3_128077_INS0451510	Chr04	33404692	33405332	26352056	26352695	640
ZS97RS3_132278_INS0461680	Chr04	33404692	33405332	27556971	27557610	640
ZS97RS3_Azucena_INS0456730	Chr04	33404692	33405332	26274365	26275004	640
ZS97RS3_Basmati1_INS0457320	Chr04	33404692	33405332	26041893	26042532	640
ZS97RS3_DHX2_INS0459530	Chr04	33404692	33405332	26945123	26945762	640
ZS97RS3_J4155_INS0452710	Chr04	33404692	33405332	27221373	27222012	640
ZS97RS3_J4155S_INS0454570	Chr04	33404692	33405332	27789278	27789917	640
ZS97RS3_Kosh_INS0462690	Chr04	33404692	33405332	27741657	27742296	640
ZS97RS3_KY131_INS0457220	Chr04	33404692	33405332	28170233	28170872	640
ZS97RS3_Lemont_INS0459010	Chr04	33404692	33405332	27074394	27075033	640
ZS97RS3_LJ_INS0460900	Chr04	33404692	33405332	27072905	27073544	640
ZS97RS3_Nipponbare_INS0460340	Chr04	33404692	33405332	27684167	27684806	640
ZS97RS3_Y58S_INS0434670	Chr04	33404692	33405304	24480360	24480971	612
ZS97RS3_Y58S_INS0434670_1	Chr04	33404692	33405332	28880083	28880722	640
ZS97RS3_ZH11_INS0460470	Chr04	33404692	33405332	27231030	27231669	640

>ZS97RS3_Nipponbare_INS0460340
GGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA