Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117534_Nipponbare_INS0406730

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os cA1: N22 | OsN22RS2

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

2704760

2706582

SV Length:

Query Start:

Query End:

Allele sv Count:

1820 bp

27682347

27684166

2

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117534_Kosh_INS0406950	Chr04	2704760	2706582	27739837	27741656	1820
117534_Nipponbare_INS0406730	Chr04	2704760	2706582	27682347	27684166	1820

>117534_Nipponbare_INS0406730
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA