Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Tumba_Nipponbare_DEL0450880

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3: Tumba | Tumba

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

21224292

21226131

SV Length:

Query Start:

Query End:

Allele sv Count:

1820 bp

27682347

27684166

24

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Tumba_117534_DEL0443690	Chr04	21224292	21228288	29235838	29239748	3911
Tumba_127652_DEL0444050	Chr04	21224292	21228288	29806671	29810572	3902
Tumba_132278_DEL0446210	Chr04	21224292	21228288	32546762	32550702	3941
Tumba_Azucena_DEL0448140	Chr04	21224292	21226131	26272545	26274364	1820
Tumba_Azucena_DEL0448140_1	Chr04	21224292	21227192	31094646	31097498	2853
Tumba_DHX2_DEL0452180	Chr04	21224292	21227169	26141294	26144148	2855
Tumba_FH838_DEL0438120	Chr04	21224292	21227688	27933912	27937258	3347
Tumba_G630_DEL0435880	Chr04	21224292	21227688	28059042	28062388	3347
Tumba_Kosh_DEL0452940	Chr04	21224292	21226131	27739837	27741656	1820
Tumba_Kosh_DEL0452940_1	Chr04	21224292	21227169	725677	728540	2864
Tumba_KY131_DEL0451270	Chr04	21224292	21227688	27320215	27323560	3346
Tumba_LJ_DEL0452520	Chr04	21224292	21227169	16310197	16313020	2824
Tumba_NamRoo_DEL0447780	Chr04	21224292	21228288	33303132	33307066	3935
Tumba_Nipponbare_DEL0450880	Chr04	21224292	21226131	27682347	27684166	1820
Tumba_Nipponbare_DEL0450880_1	Chr04	21224292	21227169	726055	728918	2864
Tumba_R498_DEL0437070	Chr04	21224292	21228288	30321810	30325753	3944
Tumba_R9311_DEL0430790	Chr04	21224292	21228288	31479368	31483314	3947
Tumba_TM_DEL0427920	Chr04	21224292	21224718	20195000	20195425	426
Tumba_TM_DEL0427920_1	Chr04	21224292	21227192	31845345	31848191	2847
Tumba_TM_DEL0427920_2	Chr04	21224292	21228288	29300692	29304601	3910
Tumba_Y58S_DEL0437600	Chr04	21224292	21228289	33184755	33188703	3949
Tumba_ZH11_DEL0450970	Chr04	21224292	21226131	27229210	27231029	1820
Tumba_ZH11_DEL0450970_1	Chr04	21224292	21227192	31923492	31926345	2854
Tumba_OglaRS2_DEL0456130	Chr04	21224292	21224925	18295467	18296078	612

>Tumba_Nipponbare_DEL0450880
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA