Variation ID: CN1_Nipponbare_INS0453060

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os XI-1A: CN1 | CN1
Os GJ-temp: Nipponbare | IRGSP 1.0
Chr04
27512440
27514258
SV Length:
Query Start:
Query End:
Allele sv Count:
1820 bp
27682347
27684166
43
Gene_id Chromosome Start End
LOC_Os04g46690 Chr04 27680026 27687609
SV_id Chromosome ref_start ref_end query_start query_end length
CN1_02428_INS0453390 Chr04 27512440 27514258 28071092 28072910 1819
CN1_02428_INS0453390_1 Chr04 27512440 27515216 6413136 6415923 2788
CN1_02428_INS0453390_2 Chr04 27512440 27516315 28433028 28436961 3934
CN1_02428_INS0453390_3 Chr04 27512440 27516315 20404542 20409416 4875
CN1_117425_INS0450040 Chr04 27512440 27514258 26490317 26492136 1820
CN1_117425_INS0450040_1 Chr04 27512440 27516315 26856826 26860761 3936
CN1_117534_INS0445590 Chr04 27512440 27516315 27327167 27331104 3938
CN1_117534_INS0445590_1 Chr04 27512440 27516315 19276133 19281005 4873
CN1_128077_INS0448070 Chr04 27512440 27514258 26350236 26352055 1820
CN1_128077_INS0448070_1 Chr04 27512440 27516315 26708477 26712412 3936
CN1_132278_INS0453600 Chr04 27512440 27514258 27555151 27556970 1820
CN1_132278_INS0453600_1 Chr04 27512440 27516315 27909166 27913099 3934
CN1_132278_INS0453600_2 Chr04 27512440 27516315 19896035 19900908 4874
CN1_Azucena_INS0451130 Chr04 27512440 27514258 26272545 26274364 1820
CN1_Azucena_INS0451130_1 Chr04 27512440 27515216 6258583 6261370 2788
CN1_Azucena_INS0451130_2 Chr04 27512440 27516315 26664721 26668656 3936
CN1_Basmati1_INS0450240 Chr04 27512440 27516315 26398447 26402383 3937
CN1_DHX2_INS0455370 Chr04 27512440 27514258 26943303 26945122 1820
CN1_DHX2_INS0455370_1 Chr04 27512440 27515216 6490196 6492982 2787
CN1_DHX2_INS0455370_2 Chr04 27512440 27515653 27301689 27304902 3214
CN1_J4155_INS0440800 Chr04 27512440 27514258 27219553 27221372 1820
CN1_J4155_INS0440800_1 Chr04 27512440 27515216 6314612 6317399 2788
CN1_J4155S_INS0443880 Chr04 27512440 27514258 27787458 27789277 1820
CN1_J4155S_INS0443880_1 Chr04 27512440 27515216 6458490 6461277 2788
CN1_J4155S_INS0443880_2 Chr04 27512440 27516315 28182966 28186905 3940
CN1_Kosh_INS0456400 Chr04 27512440 27516315 28098288 28102227 3940
CN1_KY131_INS0456030 Chr04 27512440 27514258 28168413 28170232 1820
CN1_KY131_INS0456030_1 Chr04 27512440 27515216 6878187 6880974 2788
CN1_KY131_INS0456030_2 Chr04 27512440 27516315 28516645 28520576 3932
CN1_Lemont_INS0452190 Chr04 27512440 27515216 6081863 6084650 2788
CN1_Lemont_INS0452190_1 Chr04 27512440 27516315 27442604 27446525 3922
CN1_LJ_INS0455330 Chr04 27512440 27514258 27071085 27072904 1820
CN1_LJ_INS0455330_1 Chr04 27512440 27516315 27432235 27436171 3937
CN1_NamRoo_INS0453310 Chr04 27512440 27514258 28027279 28029098 1820
CN1_NamRoo_INS0453310_1 Chr04 27512440 27516315 28386926 28390859 3934
CN1_Nipponbare_INS0453060 Chr04 27512440 27514258 27682347 27684166 1820
CN1_Nipponbare_INS0453060_1 Chr04 27512440 27515216 6674263 6677051 2789
CN1_Nipponbare_INS0453060_2 Chr04 27512440 27516315 28040600 28044536 3937
CN1_Y58S_INS0438620 Chr04 27512440 27514258 28878263 28880082 1820
CN1_Y58S_INS0438620_1 Chr04 27512440 27516315 29248374 29252310 3937
CN1_ZH11_INS0455720 Chr04 27512440 27514258 27229210 27231029 1820
CN1_ZH11_INS0455720_1 Chr04 27512440 27515216 6467871 6470657 2787
CN1_ZH11_INS0455720_2 Chr04 27512440 27516315 27587604 27591552 3949

>CN1_Nipponbare_INS0453060
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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