Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: G8_Nipponbare_DEL0445230

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1B: G8 | G8

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

20005170

20005812

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

8

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
G8_117425_DEL0434910	Chr04	20005170	20005812	26492135	26492776	642
G8_Azucena_DEL0443540	Chr04	20005170	20005812	26274363	26275004	642
G8_Basmati1_DEL0443000	Chr04	20005170	20005812	26041891	26042532	642
G8_DHX2_DEL0447420	Chr04	20005170	20005812	26945121	26945762	642
G8_KY131_DEL0445710	Chr04	20005170	20005812	28170231	28170872	642
G8_LJ_DEL0445730	Chr04	20005170	20005812	27072903	27073544	642
G8_Nipponbare_DEL0445230	Chr04	20005170	20005812	27684165	27684806	642
G8_ZH11_DEL0448400	Chr04	20005170	20005812	27231028	27231669	642

>G8_Nipponbare_DEL0445230
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA