Variation ID: G46_Nipponbare_INS0451460

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os XI-1A: G46 | G46
Os GJ-temp: Nipponbare | IRGSP 1.0
Chr04
27091428
27093246
SV Length:
Query Start:
Query End:
Allele sv Count:
1820 bp
27682347
27684166
50
Gene_id Chromosome Start End
LOC_Os04g46690 Chr04 27680026 27687609
SV_id Chromosome ref_start ref_end query_start query_end length
G46_02428_INS0451340 Chr04 27091428 27094204 6413136 6415923 2788
G46_02428_INS0451340_1 Chr04 27091428 27094288 32940474 32943336 2863
G46_02428_INS0451340_2 Chr04 27091428 27095301 28433028 28436961 3934
G46_02428_INS0451340_3 Chr04 27091428 27095301 20404542 20409416 4875
G46_117425_INS0444660 Chr04 27091428 27093246 26490317 26492136 1820
G46_117425_INS0444660_1 Chr04 27091428 27095301 26856826 26860761 3936
G46_117534_INS0445220 Chr04 27091428 27095301 27327167 27331104 3938
G46_117534_INS0445220_1 Chr04 27091428 27095301 19276133 19281005 4873
G46_125619_INS0437160 Chr04 27091428 27093246 28676767 28678586 1820
G46_128077_INS0444530 Chr04 27091428 27093490 12684948 12686983 2036
G46_128077_INS0444530_1 Chr04 27091428 27094204 6356794 6359581 2788
G46_128077_INS0444530_2 Chr04 27091428 27095301 26708477 26712412 3936
G46_132278_INS0451370 Chr04 27091428 27093246 27555151 27556970 1820
G46_132278_INS0451370_1 Chr04 27091428 27094204 6158209 6160996 2788
G46_132278_INS0451370_2 Chr04 27091428 27095301 27909166 27913099 3934
G46_132278_INS0451370_3 Chr04 27091428 27095301 19896035 19900908 4874
G46_Azucena_INS0449770 Chr04 27091428 27093246 26272545 26274364 1820
G46_Azucena_INS0449770_1 Chr04 27091428 27093490 12531627 12533662 2036
G46_Azucena_INS0449770_2 Chr04 27091428 27094204 6258583 6261370 2788
G46_Azucena_INS0449770_3 Chr04 27091428 27095301 26664721 26668656 3936
G46_Basmati1_INS0450430 Chr04 27091428 27093246 26040073 26041892 1820
G46_Basmati1_INS0450430_1 Chr04 27091428 27095301 26398447 26402383 3937
G46_CN1_INS0418660 Chr04 27091428 27094965 15755479 15759012 3534
G46_DHX2_INS0454100 Chr04 27091428 27093246 26943303 26945122 1820
G46_DHX2_INS0454100_1 Chr04 27091428 27094641 27301689 27304902 3214
G46_J4155_INS0440760 Chr04 27091428 27093246 27219553 27221372 1820
G46_J4155_INS0440760_1 Chr04 27091428 27094204 6314612 6317399 2788
G46_J4155S_INS0442970 Chr04 27091428 27093246 27787458 27789277 1820
G46_J4155S_INS0442970_1 Chr04 27091428 27094204 6458490 6461277 2788
G46_J4155S_INS0442970_2 Chr04 27091428 27095301 28182966 28186905 3940
G46_Kosh_INS0453850 Chr04 27091428 27093246 27739837 27741656 1820
G46_Kosh_INS0453850_1 Chr04 27091428 27095301 28098288 28102227 3940
G46_KY131_INS0452890 Chr04 27091428 27093246 28168413 28170232 1820
G46_KY131_INS0452890_1 Chr04 27091428 27095301 28516645 28520576 3932
G46_Lemont_INS0450900 Chr04 27091428 27093246 27072574 27074393 1820
G46_Lemont_INS0450900_1 Chr04 27091428 27093490 13809665 13811700 2036
G46_Lemont_INS0450900_2 Chr04 27091428 27094204 6081863 6084650 2788
G46_Lemont_INS0450900_3 Chr04 27091428 27095301 27442604 27446525 3922
G46_LJ_INS0452540 Chr04 27091428 27095301 27432235 27436171 3937
G46_NamRoo_INS0452260 Chr04 27091428 27094204 6558939 6561726 2788
G46_NamRoo_INS0452260_1 Chr04 27091428 27094288 33275871 33278733 2863
G46_NamRoo_INS0452260_2 Chr04 27091428 27095301 28386926 28390859 3934
G46_Nipponbare_INS0451460 Chr04 27091428 27093246 27682347 27684166 1820
G46_Nipponbare_INS0451460_1 Chr04 27091428 27094204 6674263 6677051 2789
G46_Nipponbare_INS0451460_2 Chr04 27091428 27095301 28040600 28044536 3937
G46_Y58S_INS0439880 Chr04 27091428 27093246 28878263 28880082 1820
G46_Y58S_INS0439880_1 Chr04 27091428 27095301 29248374 29252310 3937
G46_ZH11_INS0453440 Chr04 27091428 27093246 27229210 27231029 1820
G46_ZH11_INS0453440_1 Chr04 27091428 27094204 6467871 6470657 2787
G46_ZH11_INS0453440_2 Chr04 27091428 27095301 27587604 27591552 3949

>G46_Nipponbare_INS0451460
TGTCACGCCCCGAGCTAGTCCTGACTGGAATTAGCCCGTGACGCTCCAAATTAACCTGTTAATCGATACCAGTCCCAGGAAAACAGTGCTGGTATCATAGAGAGACAGAATATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGAAGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCAGGGCTTGGACCAAACATCATAGGCGCGACTTGGGAACTAGGTCGAAACCCTAAAACTCATCGAAGCCGGCTTGCTCCTGGAAGAACTCTTCATCAGCAGGATCCGCTTCATCTTCTTCAGCAACTGGGGGGGTTATTTATATAGAGCAAAGGTGAGTACAGGAGTACTCAGCAAGCCAGGGGAAATAAGTGTTTAATGCAGGCTTCAAGGAAAGGCTGTTGTTTTCGTAATTGATTTTATTTGAACTCTTTTCTGAAACAACTAAGTGAGTGCTTCTCAAACGACACGGATGAGACAGTGCGTCTTGTCCGAACGGAGTATGTGCAATGTATCAGTCTTTAGATTTTGAAACAAGGTTGGCACCCGGCCAACAGCTTTTCAACGGCCACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.