Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: DG_Nipponbare_DEL0440240

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: DG | DG

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

14249356

14249755

SV Length:

Query Start:

Query End:

Allele sv Count:

400 bp

27679732

27680131

38

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
DG_02428_DEL0437350	Chr04	14249356	14249755	28068477	28068876	400
DG_117425_DEL0428710	Chr04	14249356	14249755	26487702	26488101	400
DG_125619_DEL0424210	Chr04	14249356	14249755	28674152	28674551	400
DG_125827_DEL0419630	Chr04	14249356	14249755	29653418	29653817	400
DG_127518_DEL0425910	Chr04	14249356	14249755	28876461	28876860	400
DG_127564_DEL0420190	Chr04	14249356	14249755	29152580	29152979	400
DG_127742_DEL0424780	Chr04	14249356	14249755	28906285	28906684	400
DG_128077_DEL0435560	Chr04	14249356	14249755	26347621	26348020	400
DG_132278_DEL0436900	Chr04	14249356	14249755	27552536	27552935	400
DG_Azucena_DEL0435950	Chr04	14249356	14249755	26269930	26270329	400
DG_Basmati1_DEL0434960	Chr04	14249356	14249755	26037459	26037858	400
DG_CN1_DEL0421650	Chr04	14249356	14249755	28303555	28303954	400
DG_D62_DEL0426790	Chr04	14249356	14249755	28336112	28336511	400
DG_DHX2_DEL0439380	Chr04	14249356	14249755	26940689	26941088	400
DG_G630_DEL0423860	Chr04	14249356	14249755	28918030	28918429	400
DG_G8_DEL0422220	Chr04	14249356	14249755	28615502	28615901	400
DG_HZ_DEL0425910	Chr04	14249356	14249755	29077952	29078351	400
DG_IR64_DEL0418310	Chr04	14249356	14249755	27263808	27264207	400
DG_J4155_DEL0434510	Chr04	14249356	14249755	27216938	27217337	400
DG_J4155S_DEL0436110	Chr04	14249356	14249755	27784843	27785242	400
DG_Kosh_DEL0440540	Chr04	14249356	14249755	27737222	27737621	400
DG_Lemont_DEL0436780	Chr04	14249356	14249755	27069959	27070358	400
DG_LJ_DEL0437860	Chr04	14249356	14249755	27068470	27068869	400
DG_NamRoo_DEL0438770	Chr04	14249356	14249755	28024669	28025068	400
DG_Nipponbare_DEL0440240	Chr04	14249356	14249755	27679732	27680131	400
DG_R498_DEL0425860	Chr04	14249356	14249755	27798469	27798868	400
DG_R527_DEL0426410	Chr04	14249356	14249755	28379130	28379529	400
DG_R9311_DEL0424130	Chr04	14249356	14249755	28987040	28987437	398
DG_S548_DEL0425880	Chr04	14249356	14249755	27860187	27860586	400
DG_TM_DEL0418320	Chr04	14249356	14249755	27024824	27025223	400
DG_Tumba_DEL0421090	Chr04	14249356	14249755	29345900	29346299	400
DG_WSSM_DEL0425700	Chr04	14249356	14249755	28467208	28467607	400
DG_Y3551_DEL0427310	Chr04	14249356	14249755	29139593	29139992	400
DG_Y58S_DEL0427520	Chr04	14249356	14249755	28875648	28876047	400
DG_YX1_DEL0422570	Chr04	14249356	14249755	27361865	27362264	400
DG_ZH11_DEL0439220	Chr04	14249356	14249755	27226595	27226994	400
DG_OglaRS2_DEL0445370	Chr04	14249356	14249939	24354508	24355091	584
DG_MH63RS3_DEL0428020	Chr04	14249356	14249755	29399278	29399677	400

>DG_Nipponbare_DEL0440240
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCGTGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTGTTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTGGGCTGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCTAGATCAGGGATGGGTGGAGGTCATCAGCGGCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGTGGCGGCGATTCATCGACGACGGT