Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_Nipponbare_INS0449570

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: FH838 | FH838

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

27887293

27887938

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

18

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_02428_INS0452070	Chr04	27887293	27887938	28072909	28073550	642
FH838_117425_INS0450420	Chr04	27887293	27887938	26492135	26492776	642
FH838_125619_INS0445010	Chr04	27887293	27887938	28678585	28679226	642
FH838_128077_INS0446900	Chr04	27887293	27887938	26352054	26352695	642
FH838_132278_INS0450690	Chr04	27887293	27887938	27556969	27557610	642
FH838_Azucena_INS0450970	Chr04	27887293	27887938	26274363	26275004	642
FH838_Basmati1_INS0451230	Chr04	27887293	27887938	26041891	26042532	642
FH838_DHX2_INS0451670	Chr04	27887293	27887938	26945121	26945762	642
FH838_J4155_INS0445770	Chr04	27887293	27887938	27221371	27222012	642
FH838_J4155S_INS0448160	Chr04	27887293	27887938	27789276	27789917	642
FH838_Kosh_INS0453970	Chr04	27887293	27887938	27741655	27742296	642
FH838_KY131_INS0452690	Chr04	27887293	27887938	28170231	28170872	642
FH838_Lemont_INS0450950	Chr04	27887293	27887938	27074392	27075033	642
FH838_LJ_INS0452470	Chr04	27887293	27887938	27072903	27073544	642
FH838_NamRoo_INS0451940	Chr04	27887293	27887938	28029097	28029738	642
FH838_Nipponbare_INS0449570	Chr04	27887293	27887938	27684165	27684806	642
FH838_Y58S_INS0442810	Chr04	27887293	27887938	28880081	28880722	642
FH838_ZH11_INS0453860	Chr04	27887293	27887938	27231028	27231669	642

>FH838_Nipponbare_INS0449570
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA