Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: D62_Nipponbare_DEL0443100

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: D62 | D62

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

19779781

19780423

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

8

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
D62_117425_DEL0441430	Chr04	19779781	19780423	26492135	26492776	642
D62_132278_DEL0445630	Chr04	19779781	19780423	27556969	27557610	642
D62_Basmati1_DEL0442200	Chr04	19779781	19780423	26041891	26042532	642
D62_Kosh_DEL0448160	Chr04	19779781	19780423	27741655	27742296	642
D62_KY131_DEL0446250	Chr04	19779781	19780423	28170231	28170872	642
D62_LJ_DEL0445760	Chr04	19779781	19780423	27072903	27073544	642
D62_Nipponbare_DEL0443100	Chr04	19779781	19780423	27684165	27684806	642
D62_Y58S_DEL0419700	Chr04	19779781	19780423	28880081	28880722	642

>D62_Nipponbare_DEL0443100
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA