Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: S548_Nipponbare_DEL0439780

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1B: S548 | S548

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

19334922

19335564

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

8

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
S548_117425_DEL0437340	Chr04	19334922	19335564	26492135	26492776	642
S548_Azucena_DEL0437450	Chr04	19334922	19335564	26274363	26275004	642
S548_Kosh_DEL0440070	Chr04	19334922	19335564	27741655	27742296	642
S548_KY131_DEL0438530	Chr04	19334922	19335564	28170231	28170872	642
S548_Lemont_DEL0436810	Chr04	19334922	19335564	27074392	27075033	642
S548_LJ_DEL0443040	Chr04	19334922	19335564	27072903	27073544	642
S548_Nipponbare_DEL0439780	Chr04	19334922	19335564	27684165	27684806	642
S548_Y58S_DEL0418810	Chr04	19334922	19335564	28880081	28880722	642

>S548_Nipponbare_DEL0439780
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA