Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: G630_Nipponbare_INS0452080

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: G630 | G630

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

28012425

28013070

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

17

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
G630_02428_INS0451490	Chr04	28012425	28013070	28072909	28073550	642
G630_125619_INS0436990	Chr04	28012425	28013070	28678585	28679226	642
G630_128077_INS0448530	Chr04	28012425	28013070	26352054	26352695	642
G630_132278_INS0449520	Chr04	28012425	28013070	27556969	27557610	642
G630_Azucena_INS0447190	Chr04	28012425	28013070	26274363	26275004	642
G630_Basmati1_INS0448150	Chr04	28012425	28013070	26041891	26042532	642
G630_DHX2_INS0451810	Chr04	28012425	28013070	26945121	26945762	642
G630_J4155_INS0447020	Chr04	28012425	28013070	27221371	27222012	642
G630_J4155S_INS0448790	Chr04	28012425	28013070	27789276	27789917	642
G630_Kosh_INS0453930	Chr04	28012425	28013070	27741655	27742296	642
G630_KY131_INS0452680	Chr04	28012425	28013070	28170231	28170872	642
G630_Lemont_INS0446490	Chr04	28012425	28013070	27074392	27075033	642
G630_LJ_INS0451790	Chr04	28012425	28013070	27072903	27073544	642
G630_NamRoo_INS0449780	Chr04	28012425	28013070	28029097	28029738	642
G630_Nipponbare_INS0452080	Chr04	28012425	28013070	27684165	27684806	642
G630_Y58S_INS0431030	Chr04	28012425	28013070	28880081	28880722	642
G630_ZH11_INS0453020	Chr04	28012425	28013070	27231028	27231669	642

>G630_Nipponbare_INS0452080
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA