Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_Nipponbare_DEL0432270

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trop1: Azucena | AzucenaRS1

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

29373137

29374355

SV Length:

Query Start:

Query End:

Allele sv Count:

1217 bp

27682950

27684166

6

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_128077_DEL0425010	Chr04	29373137	29374355	26350839	26352055	1217
Azucena_J4155_DEL0435640	Chr04	29373137	29374355	27220156	27221372	1217
Azucena_J4155S_DEL0437610	Chr04	29373137	29374355	27788061	27789277	1217
Azucena_LJ_DEL0429610	Chr04	29373137	29374355	27071688	27072904	1217
Azucena_Nipponbare_DEL0432270	Chr04	29373137	29374355	27682950	27684166	1217
Azucena_ZH11_DEL0433380	Chr04	29373137	29374355	27229813	27231029	1217

>Azucena_Nipponbare_DEL0432270
CACCCGGGCCAACAACTTTTCAAACGGCCACCCGGGCCAACCACTTTCAAACGGCCACCCGGGCCTAGCTGATCCCGTCAGCTACAGATTTTTCAAACATCAAACCCCTTTTCACAACAGCAATTTCACAAGCAGTAGTCAAACAAAACTACGCTAAGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCTGTTCGAACAGTTAGTTAACCTCTACAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCGAAAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGCTAGGTCCCAGACCATACTGTGCCAGGAAGCCCAGGGGGGTCCTCTCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCATGGCTCCCCTGATAAGCTAGTTACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGTCTTATGTTTGGATGAAATTCCAAGGAAACGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCGCGGTTTTAGAAATTCATTTAGTTCGCAAGCACCGACCCAGGTGTCGGGTTTTCCAAGTCTTTTGTAAAACCCAAGTTTTACCCAAGTTGTTTTTCAGATTTTAAGTTTGAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGACATGGTATAACAATTAACAAAGGAAGGATCAAATGCAACAAATTAGGCAGGTCCGCCAATCTGCCTTGCAGACGGGACAACCGATTAAGTGCGATCCTATCAATGCATAATATTTTGCAAGCAATATAATTAAATTTCAAATATAGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCCGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGAAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATAAAGCCCTATTAATGACCTCTAAGCGTGCCATTAGGTAGATCTCGAGATTTGGGGAATTTTGGAAGTTGAACGGAGTCAATCGGATTTACGGTTGGGAAGATATTGAATTTCTAAGATTATTGGATTTTTGGTCTGAAGGAAAAAGGATTTA