Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R527_Nipponbare_INS0448380

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1B: R527 | R527

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr04

27492752

27493397

SV Length:

Query Start:

Query End:

Allele sv Count:

642 bp

27684165

27684806

18

Gene_id	Chromosome	Start	End
LOC_Os04g46690	Chr04	27680026	27687609

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R527_02428_INS0451980	Chr04	27492752	27493397	28072909	28073550	642
R527_117425_INS0444390	Chr04	27492752	27493397	26492135	26492776	642
R527_125619_INS0433530	Chr04	27492752	27493397	28678585	28679226	642
R527_128077_INS0445780	Chr04	27492752	27493397	26352054	26352695	642
R527_132278_INS0449410	Chr04	27492752	27493397	27556969	27557610	642
R527_Azucena_INS0444590	Chr04	27492752	27493397	26274363	26275004	642
R527_Basmati1_INS0451440	Chr04	27492752	27493397	26041891	26042532	642
R527_DHX2_INS0448410	Chr04	27492752	27493397	26945121	26945762	642
R527_J4155_INS0440260	Chr04	27492752	27493397	27221371	27222012	642
R527_J4155S_INS0442550	Chr04	27492752	27493397	27789276	27789917	642
R527_Kosh_INS0447840	Chr04	27492752	27493397	27741655	27742296	642
R527_KY131_INS0446910	Chr04	27492752	27493397	28170231	28170872	642
R527_Lemont_INS0444110	Chr04	27492752	27493397	27074392	27075033	642
R527_LJ_INS0451300	Chr04	27492752	27493397	27072903	27073544	642
R527_NamRoo_INS0451150	Chr04	27492752	27493397	28029097	28029738	642
R527_Nipponbare_INS0448380	Chr04	27492752	27493397	27684165	27684806	642
R527_Y58S_INS0423950	Chr04	27492752	27493397	28880081	28880722	642
R527_ZH11_INS0448140	Chr04	27492752	27493397	27231028	27231669	642

>R527_Nipponbare_INS0448380
TAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGGTGGCTGTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTTCAAAATCTAAAGACTGATACATTGCACATACTCCGTTCGGACAAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTCAGAAAAGAGTTCAAATAAAATCAATTACGAAAACAACAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCTGTACTCACCCTTGCTCTATATAAATAACCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAAGAGTTCTTCCAGGAGTAAGCCGGCTTCGATGAGTTTTAGGGTTTCGGCCTAATTCCCAAGTCGCGCCTGTGATGTTTGGTCCAAGCCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAATTCCAGTCGGGACTAGCTCGGGGCGTGACA