Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Loci	Gene Symbol(s)	Function	GO
OsMH63_03G0197200	OGI:03031790 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr03:12161853-12163446	OsDLN85,OsDLN85a,DLN85a,DLN85b,OsDLN85b,DLN85	Myb-related protein 2 [UniProtKB/Swiss-Prot: Q9SQQ9] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_03G0206800	OGI:03033260 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr03:12845461-12846612	OsOFP13,OsOFP9	Transcription repressor OFP3 [UniProtKB/Swiss-Prot: Q9LVL4] More	GO:0003677 (DNA binding) GO:0045892 (negative regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_02G0069600	OGI:02012500 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr02:4018029-4020788	OsAPL	Myb family transcription factor IPN2 [UniProtKB/Swiss-Prot: E5L8F7] More	GO:0003677 (DNA binding) GO:0009877 (nodulation) GO:0005634 (nucleus) More
OsMH63_02G0146500	OGI:02025630 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr02:9100505-9102840	-	High mobility group B protein 13 [UniProtKB/Swiss-Prot: Q9T012] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_11G0005700	OGI:11001050 \| 48/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:352612-353082	LBD11-1	LOB domain-containing protein 12 [UniProtKB/Swiss-Prot: Q8LBW3] More	GO:0003677 (DNA binding) GO:0009965 (leaf morphogenesis) GO:0010016 (shoot system morphogenesis) More
OsMH63_11G0008200	OGI:11001580 \| 37/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:466007-470222	OsDRM1a,DRM1A	DNA (cytosine-5)-methyltransferase DRM1A [UniProtKB/Swiss-Prot: Q2RBJ4] More	GO:0003886 (DNA (cytosine-5-)-methyltransferase activity) GO:0003677 (DNA binding) GO:0005634 (nucleus) More
OsMH63_11G0024000	OGI:11004350 \| 35/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:1208924-1211751	-	Zinc finger CCCH domain-containing protein 53 [UniProtKB/Swiss-Prot: Q0D3J9] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0003723 (RNA binding) More
OsMH63_10G0225200	OGI:10043590 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr10:15014230-15019018	OsC3H62,C3H62	Zinc finger CCCH domain-containing protein 62 [UniProtKB/Swiss-Prot: Q338N2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_10G0267900	OGI:10051470 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr10:18004931-18015743	-	AT-rich interactive domain-containing protein 2 [UniProtKB/Swiss-Prot: Q9LDD4] More	GO:0003677 (DNA binding) GO:0005634 (nucleus) GO:0005773 (vacuole) More
OsMH63_11G0278500	OGI:11052940 \| 23/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:20678807-20682300	-	Zinc finger protein 511 [UniProtKB/Swiss-Prot: Q7ZZ00] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_11G0289400	OGI:11054730 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:21391975-21394500	NAC127,OsEnS-145,ONAC127	NAC transcription factor NAM-1 [UniProtKB/Swiss-Prot: A0SPJ8] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_11G0289600	OGI:11054760 \| 44/50	Minghui 63 \| MH63RS3 \| HZAU	Chr11:21409331-21411275	NAC129,ONAC129	NAC domain-containing protein 41 [UniProtKB/Swiss-Prot: O22798] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_12G0019600	OGI:11004350 \| 35/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:1164985-1167828	-	Zinc finger CCCH domain-containing protein 22 [UniProtKB/Swiss-Prot: Q10M00] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0003723 (RNA binding) More
OsMH63_12G0348600	OGI:12066840 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:24646647-24653473	OSHB3,Oshox33,SIP22,HB3,OsSIP22,HOX33,OsHox33	Homeobox-leucine zipper protein HOX33 [UniProtKB/Swiss-Prot: Q2QM96] More	GO:0003677 (DNA binding) GO:0008289 (lipid binding) GO:0005634 (nucleus) More
OsMH63_04G0440600	OGI:04083660 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr04:29788951-29793514	OsHDMA701,HDMA701,PAO9,OsPAO9	Lysine-specific histone demethylase 1 homolog 3 [UniProtKB/Swiss-Prot: Q01H90] More	GO:0003677 (DNA binding) GO:0016491 (oxidoreductase activity) GO:0006325 (chromatin organization) More
OsMH63_04G0464000	OGI:04087270 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr04:31229600-31236624	RAVL1,OsRAVL1,RAVL	B3 domain-containing protein Os04g0581400 [UniProtKB/Swiss-Prot: Q7F9W2] More	GO:0003677 (DNA binding) GO:0005634 (nucleus)
OsMH63_03G0539700	OGI:03088610 \| 21/50	Minghui 63 \| MH63RS3 \| HZAU	Chr03:34798682-34800192	ZFP1,OsDLN99,OsWZF1,DLN99,WZF1,OsZFP1	Zinc finger protein 1 [UniProtKB/Swiss-Prot: Q42430] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_04G0338200	OGI:04066360 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr04:23200902-23202613	OsZHD8	Zinc-finger homeodomain protein 8 [UniProtKB/Swiss-Prot: Q7X7N3] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_03G0404300	OGI:03066220 \| 23/50	Minghui 63 \| MH63RS3 \| HZAU	Chr03:25918945-25920524	OsMSR15,DLN92,OsDLN92	Zinc finger protein 1 [UniProtKB/Swiss-Prot: Q42430] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_04G0071400	OGI:04015350 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr04:4289926-4295054	-	AT-rich interactive domain-containing protein 2 [UniProtKB/Swiss-Prot: Q9LDD4] More	GO:0003677 (DNA binding) GO:0005634 (nucleus) GO:0005773 (vacuole) More
OsMH63_03G0593600	OGI:03097210 \| 47/50	Minghui 63 \| MH63RS3 \| HZAU	Chr03:37947263-37948221	NAC77,ONAC077,ONAC77	NAC domain-containing protein JA2 [UniProtKB/Swiss-Prot: Q9SQL0] More	GO:0003677 (DNA binding) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_09G0338200	OGI:09058710 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr09:21913245-21916827	RF2A,RF2a,OsbZIP75	Transcription factor RF2a [UniProtKB/Swiss-Prot: Q69IL4] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_09G0340700	OGI:09059270 \| 47/50	Minghui 63 \| MH63RS3 \| HZAU	Chr09:22138485-22143855	DLN229,BZIP76,OsbZIP76,OsDLN229	Transcription factor RF2b [UniProtKB/Swiss-Prot: Q6S4P4] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_08G0352900	OGI:08064460 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:23915498-23925583	OsARID4,ARID4	AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot: Q6NQ79] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_08G0353100	OGI:08064480 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:23953162-23969200	-	AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot: Q6NQ79] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_09G0265300	OGI:09046960 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr09:17401617-17408684	OsARID,ARID5	AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot: Q6NQ79] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_02G0032400	OGI:02006570 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr02:1915678-1918506	OsNLP6,NLP6.1,NLP6	Protein NLP6 [UniProtKB/Swiss-Prot: Q8RWY4] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_01G0535800	OGI:01097220 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr01:34193670-34196076	OsSAP3,SAP3	Zinc finger A20 and AN1 domain-containing stress-associated protein 3 [UniProtKB/Swiss-Prot: Q5JN07] More	GO:0003677 (DNA binding) GO:0008270 (zinc ion binding)
OsMH63_01G0596300	OGI:01107740 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr01:37898124-37900347	WOX2L,Os,WOX5,WOX2,OsWOX2,OsWOX5,OsWOX2L	WUSCHEL-related homeobox 5 [UniProtKB/Swiss-Prot: Q8LR86] More	GO:0003677 (DNA binding) GO:0007275 (multicellular organism development) GO:0005634 (nucleus) More
OsMH63_01G0374500	OGI:01069660 \| 2/50	Minghui 63 \| MH63RS3 \| HZAU	Chr01:24003229-24011975	-	Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot: P13526] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0005634 (nucleus) More
OsMH63_01G0436500	OGI:01079950 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr01:27907795-27909680	OsC3H9,C3H9	Zinc finger CCCH domain-containing protein 9 [UniProtKB/Swiss-Prot: A2ZVY5] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_02G0056700	OGI:02010350 \| 47/50	Minghui 63 \| MH63RS3 \| HZAU	Chr02:3313091-3319858	DLN42b,BIP105,DLN42,OsC3H13,OsDLN42b,OsDLN42,DLN42a,C3H13,OsDLN42a	Zinc finger CCCH domain-containing protein 13 [UniProtKB/Swiss-Prot: Q6H7U2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_07G0419600	OGI:07071000 \| 46/50	Minghui 63 \| MH63RS3 \| HZAU	Chr07:26745754-26750367	-	Zinc finger CCCH domain-containing protein 62 [UniProtKB/Swiss-Prot: Q338N2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_08G0003000	OGI:08000590 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:256282-259242	-	Transmembrane protein 18 [UniProtKB/Swiss-Prot: Q28GF5] More	GO:0003677 (DNA binding) GO:0016021 (integral component of membrane) GO:0031965 (nuclear membrane) More
OsMH63_07G0372200	OGI:07063710 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr07:24031239-24033880	NAC3,OsNAC3,ONAC10,ONAC010,OsSTA199,NAC10	NAC transcription factor ONAC010 [UniProtKB/Swiss-Prot: A2YMR0] More	GO:0003677 (DNA binding) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_06G0480000	OGI:06085580 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr06:31313955-31318327	-	Homeobox-leucine zipper protein HOX29 [UniProtKB/Swiss-Prot: A2WLR5] More	GO:0003677 (DNA binding) GO:0008289 (lipid binding) GO:0005634 (nucleus) More
OsMH63_07G0137900	OGI:07023180 \| 29/50	Minghui 63 \| MH63RS3 \| HZAU	Chr07:8009083-8010207	ONAC100,NAC100	NAC domain-containing protein 41 [UniProtKB/Swiss-Prot: O22798] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_08G0241900	OGI:08044700 \| 48/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:16770181-16770802	-	Myb family transcription factor PHL12 [UniProtKB/Swiss-Prot: Q8VYI2] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_08G0254500	OGI:08048010 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:17587372-17587941	-	AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot: Q6NQ79] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_08G0188500	OGI:08034690 \| 22/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:12771252-12772760	OsCTZFP8,CTZFP8	Zinc finger protein 1 [UniProtKB/Swiss-Prot: Q42430] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_12G0001300	OGI:12000210 \| 27/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:128398-130989	-	WUSCHEL-related homeobox 3 [UniProtKB/Swiss-Prot: Q33DK1] More	GO:0003677 (DNA binding) GO:0007275 (multicellular organism development) GO:0005634 (nucleus) More
OsMH63_12G0005100	OGI:12000810 \| 14/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:367945-368421	-	LOB domain-containing protein 12 [UniProtKB/Swiss-Prot: Q8LBW3] More	GO:0003677 (DNA binding) GO:0009965 (leaf morphogenesis) GO:0010016 (shoot system morphogenesis) More
OsMH63_12G0025300	OGI:12004120 \| 46/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:1474760-1475625	-	Putative zinc finger CCCH domain-containing protein 64 [UniProtKB/Swiss-Prot: A3CEM4] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0003729 (mRNA binding) More
OsMH63_12G0048700	OGI:12007540 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:2792544-2793853	ONAC134,NAC134	NAC domain-containing protein 90 [UniProtKB/Swiss-Prot: Q9FMR3] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_09G0356100	OGI:09062230 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr09:23025482-23026854	OsMYB108,OsMYB31,OsDLN231,MYB31,MYB108,R2R3-MYB,DLN231	Myb-related protein Hv1 [UniProtKB/Swiss-Prot: P20026] More	GO:0003677 (DNA binding) GO:0005634 (nucleus)
OsMH63_10G0048400	OGI:10010270 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr10:3368271-3368570	-	Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot: Q6TAQ6] More	GO:0003677 (DNA binding) GO:0008289 (lipid binding) GO:0005634 (nucleus) More
OsMH63_10G0244500	OGI:10047130 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr10:16420712-16422828	ONAC119,NAC119	NAC transcription factor NAM-1 [UniProtKB/Swiss-Prot: A0SPJ8] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_12G0338700	OGI:12065460 \| 20/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:23954878-23960781	BZIP88,OsbZIP88	bZIP transcription factor RISBZ4 [UniProtKB/Swiss-Prot: Q6H500] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_08G0063600	OGI:08010850 \| 49/50	Minghui 63 \| MH63RS3 \| HZAU	Chr08:4245553-4251132	-	Clp protease adapter protein ClpF, chloroplastic [UniProtKB/Swiss-Prot: Q67Y99] More	GO:0003677 (DNA binding) GO:0009507 (chloroplast) GO:0009840 (chloroplastic endopeptidase Clp complex) More
OsMH63_12G0144200	OGI:12027890 \| 50/50	Minghui 63 \| MH63RS3 \| HZAU	Chr12:9451298-9459664	OsDLN256,OsC3H65,C3H65,DLN256	Zinc finger CCCH domain-containing protein 65 [UniProtKB/Swiss-Prot: Q2QTY2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0003729 (mRNA binding) More

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