Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0048400 | OGI:10010270 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr10:3368271-3368570 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Lemont_MH63RS3_OTH1003990,128077_MH63RS3_OTH1003120,117534_MH63RS3_OTH1004630,Azucena_MH63RS3_OTH1003870,
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| DNA seq | ATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGCAGTGACGGCGGAGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGTACACGCCGGATCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGCTTCTCTCGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGA |
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| CDS seq | ATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGCAGTGACGGCGGAGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGTACACGCCGGATCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGCTTCTCTCGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGA |
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRR |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:Q6TAQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0048400 | OsMH63_10T0048400.1 | Chr10 | 3368271 | 3368570 | + | maker | ||
| CDS seq | ATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGCAGTGACGGCGGAGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGTACACGCCGGATCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGCTTCTCTCGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGA
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.1766915 | 16.494827 | 20.5456295 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002470 | RBH | 1.223662 | 0.000000 | 8.923565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0054000 | RBH | 2.142302 | 8.4804505 | 8.55395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002560 | RBH | 0.000000 | 17.637552 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002390 | RBH | 0.402143 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002580 | RBH | 0.857622 | 4.714236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C10g33289 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_10g0032300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_10g0032000 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_10g0032000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_10g0031900 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_035693 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
