Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0002390 | OGI:10010270 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:3396290-3398140 | ||||||||
| Gene Symbol | HOX9, Oshox9, OsHox9, OsHB2, HB2, OSHB2 | ||||||||||
| DNA seq | gtgctgacctcctctaccgtgatggcctcctcgaccttgtggttgcgtccacggggggagggaggaggcggcacccgcccgagctgccgccggtgctcccCtcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtgccccctcccttccctTgtggcggcagtggcgaaggtacctacgtTggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttcccccgtcgccgcgttgcctctccgtcctctcctccgcagcttcccaaccgttcccctctcaactctcgacctctcctctctacgcggaacgccatgaccgtcgccgccgaggtcgacgcatcccctgacggagaggagaggaggaggcaagcttgcaatcgcacaaccatctatcgatttctcccttccttctctttcttctttctttctttctttcgtttccccCtctcacatttcaggttattttttctcctcatcctctccggatgatttcacttttgctcgaaatctctcatgttgttgttgtgtTgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaaggtgagcaaaagcatgcagggatatactatcaaactggtttgcctttTgtgtgtctggctgtgaaatgttctggacaaattggttgacaatggagcaatagcaatagtagtgttcaattgttTgccttggttgtgcatactctgcttcaactatatttaggaattgcaagtctatgtatttatttgttttgcttcctttcttgcataatggaacaacCtttatataatcaaggaattatcagagtatgtgccagattaagccatccattaattagatgctgaagtaaactatatgactatattgcgatgtattctaattccactacttacaaaactgtagggtataagatttgcttatttttagaagataggctaaacgaggatcctttaggtgacatggccaaactaagacacatatacataacgtattatcatgcatctgatagtaatgcaaaacaatgcagtcctatttactttcactgcaggtatttaggctcatcttttatttttctcaagaggcacttaacatgatatacaaaatttgaagagttacattctttaaaaaacttctatgagttctgcctaaatgattgttatccatagtgtgcctaaataattgttcgatctagaggtgatccaaagattcgtctatattagacgtaacaataatgcagtgttttttttgtttattttttagcctacaaatgtttgacaagaagaggatgaaagagtgacataggcgagctctgtagcatatatagaatgtttgctatccactggtacatctttaacccgagcctacctactgtatagatgtgtttagtacgtgcttactatgcttaattttggggataatatagtgcgacgtgtaagaaaattcagaactatgttgtatgctctagctgaatttgtttacttcctacaaaaaaaatggatgaactactgatccagttcatgttgtg
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| CDS seq | atgatttcacttttgctcgaaatctctcatgttgttgttgtgtTgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga |
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:Q6TAQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0002390 | OsLiXu_10g0002390.01 | Chr10 | 3396290 | 3398140 | + | NAM | ||
| CDS seq | atgatttcacttttgctcgaaatctctcatgttgttgttgtgtTgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.402143 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0480200 | SBH | 1.555576 | 0.975666 | 4.297114 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0480200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002470 | RBH | 1.223662 | 0.000000 | 8.923565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014830 | SBH | 0.022099 | 0.207270 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0048400 | RBH | 7.1766915 | 16.494827 | 20.5456295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0054000 | RBH | 2.142302 | 8.4804505 | 8.55395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014390 | SBH | 0.114632 | 0.082802 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014300 | SBH | 0.149061 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002560 | RBH | 0.000000 | 17.637552 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002580 | RBH | 0.857622 | 4.714236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014640 | SBH | 0.000000 | 2.643862 | 5.792983 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014620 | SBH | 0.672999 | 7.992624 | 7.262199 |
