Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0014390 | OGI:10056600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:20141799-20148766 | ||||||||
| Gene Symbol | HOX9, Oshox9, OsHox9, OsHB2, HB2, OSHB2 | ||||||||||
| DNA seq | GCTGCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGTGCTGTGATTGCTGCCTCGGGGTGGGCGGTGCGAGCTACATACAGCACACCGGCGGCGGCGGCGGCGAGGCTCCGGGAGAGGTCCAGCTAGGCGTGGTGGGTGGTGGGTGGTGGTTTCTTGATTTCTTGTGTTTGGGCTGTGTCGGCGGCGGGTGATGGCGGCGGCGGCTCCGTGCGCCGGAGCGCGGGGCGGCTAGGGGCGGCTGTTTCTCTGAGGCGTCTCTCCCCCGGCGGCGGCGGTGGAGGTATGTTGTGAGCTTCTCTTCTGCTGCTGTTCGTCGCTTTTGGGGTTTTCCGGGGATGGTTCTCCGCTGTTCATATCCTCCTTGCCATTACGGTTTTTCTAACAATTTTTTTTCATGATTTTTTGAGCCTTTGGTTCATCCAAAGCTTCAAACCCCGATTCTTGGTAGATTATTAATTTTACTCGATTTAAAAACCGTGCTCTTCGCCTCCAATTTCGCGACTCCCGCGGCGGCGGCGTCTCATCGCCGGCATTTCGCGTGCTTTGCTCTGCAGAATCGGCGCGTCCTTTGCGTGCTTTTCCACGCCTTGTTGTTCAAGGGAGAGGAGAGGAGAGGAAGAGGCAAGCTTGCGCAATCGCACAACCGCCTGTCGATTTCTCTCTTTCTTTTCTCTCTTTCTTTCTCTTTCTTTTTTTCATTTCCCCCTTTCACATGTCAGGTTATTTTTTTTCTCCTCGTCTCCTGACGATTTCGCTTTTGCTCGAAATCTCCCAGGTTTGTTGTTGTTGTGTTGAAGGCGGAGAAGAGGGGAGGCTTTGGTTGTGGTGGAGGAGGAGGATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGCTGCTCCGCGACTGCCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGAGCCTAATCATGCACACATATACTATCATACTAGTTTGCCCTTTTTTTTTTGTGTGTCTGGATGTGAAATGTTATGGTCTTATGGATAAATTGGTTGAGAATGGAGCAATAGCAATGGTAGTGTTCAATTGTTTGCCTTTGTTGGTATTGTGAGGATACAGGAAGAAAGTTACTTGTTGTGGGGTTCTTGAATGTGTTTGCTTTGCAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACCGAAAATTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGGTCTCCCAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATGTATGTCTTCGTGTTGTTGAGCTCACATCGTGCTTCGGGTGGAAAAGGCGCTGCCCTTTCTTTGTTTTCTCGCCTGCTCATATCATCTCTGTTCATTGTTTGCAGCCGTCATTGGGCAATGATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAAGTAACCCGTCTGGGTTAGTGAAATTTCCTTTGAATGTTTTGGTTTTGGGCAATTGGAAGCGGCTGCCCTCTAGGGATTGGTTTGCCATTTTCTTGATAAACTAGTTATATGATTTTTGTCCAGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGGCTACAGGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGGTTGATTGCCAACTTCTCAGATTCACTCTGCCTGCATCAAATGACGTGTGCATTCGAATGTTCTAATTTGTGTTCCCTTTTCTTTGATAAGCCTGGTCCGGATTCGTTTGGTATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAATCTAGAACCAACAAAGGTAATAGCATTCATCAGTACTTCATTTATTTATTTATTTTTAATTCTTAATTCTACAACAATGCCTGCTGTTTGCTTCCAAGAAAAAGAATTCCTAAACCAGCTTCATCTGCAAGTAACTATGCTGTTTTCATGCTGACATACTTTCGATCAAAGAAAAGTCCTTTAAAGTACCCGTCACAAGCACAACTAGCTGTGCTGTGCATACATGAACTCTTTTTTACTTGAGGGGCAGACTCCTTTACTAGAATGAAGAGTTGCCAAGTTTTCGGTCTCACGCCATCCACAAAAAGAAAAGTTCTCGCTCTCTCTGGCTTAACAGCTAAGGTGTTCCACATCCAAAGATTCATTGCAAAATCTTCTCTTCATGCATTTTGTTCCATGTTGGACATAATTCTTCATACGTATTTGGTTGATGTGAATATTTTCTAGAAAGCTGAAAGACTTTATTGTTTTCAGAAAATTGTTGGGAGATTCTTATAGTGTGCTATGCAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTGATTGTCGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAACTTGTTTACATGCAGGTGAGCGTTACATCCTAACTTTTTTCTTGAATTAAGTATCCCATCATTAATTTTTGCCACATGCATTCCCTTTTTATTTATCATTCTTGGCTTTTTCGCTCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACACTTAGATACACAACTACAATGGAGGATGGCAGCCTTGTGGTGCGTTGAGCTTGAGCATCTTCATTTTATTTTAGTTTGCCTACATTGTAAATTAGCACAGGTGTCCTAAGTCCATGTATCTTGCAGGTCTGTGAGAGATCATTGAGTGGTTCTGGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTCCTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTGGATCTTGAGGTGTGATCTTCAAGTTCTGCATTCTTTCTAGTTAGATGTGCTCTGCATTTGAGTCATTATTTCTTTTATTAATTTACTTAGATTCCATTTTACAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAGTAAGTTCCTATAACATTTCCTGATCTGCTTTTCTCTTGACAATTCAATGATATTCTCTCTTGTTACATACATATATATGAAGAAATGCCCACTGTTTCCTTATGATTGGTCATTTCCTCAAGACCTACAATTGCATGGTGCAATCCCAATGTTAAGTACCCACTGTTTGTAGTTAGATTAGACGGTTCATACATTGTTCAGTCCCCATAGTAAGTATTACAACGCCTACACCTGAGAAGTGTTGACATATCACTAAATTCTTTGTTTCCTGAAAGTCTAATAGTTTTGGAGAGTTAAGGTTGGGGTAGTGCTTGAGCCTGTAATGTCAATTTCATCATTTTTTTTTCTAGAGGCTACTTAGCCTTATTCAAATAAGTATACTGAAGTGCTTTAAGTTTTCTTTCATATATATTCTAATCATAGCCCATCTTTGCATCTTTGGACTACTGAAATGATATTAATTTTCTTCGTCATATAATGATTACTCTTACTATAAAGGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTAGTCAGAGGTTGAGTAGGTATGTCCAGGATATAAACTTCTTTCGCTTCTACTGTTTATATTGGATGTTTTTTATTCTAACACATTACTATGCCCATTTAGAGGCTTCAATGATGCTATTAGTGGTTTCAACGATGATGGTTGGTCTGTCATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTAGGAATACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGGCATCCATGCTACTGCAGGTGAGTGTTAAATATAAATTTGTTTCTATCGATGCAGGCTGCTTAGTTTTCAGTGCCTAAGATGTGAATTCACTTACGTTTTGTTTTTTATTCTTAACTGTAACTTTTCAAGAGCTTACTTTTTTTTTTAATTTGCATCCTAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATCGTTCTGAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCTCATGTTCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCACTTGCTCACACGGTGGAGAATGAGGAGGTATGCTGACAGATCTTTAACATTTCATAACTTGCTAGGTGCTGTTCCGTGACTATTTTCATTATTAGGTTTTTTTTATTTTTATATAGTATCTTTGAATATGTTCTTATTTATCTAGTTTATTGTCATTTTTCCAATTGATGATAGAGGATTTCTATGTAGCCTTCCATTGTTATTATTATGTCCCTTTAGTAGTTGGTCTTTGTGCTACTTTCCTTGTCTAGTAGTGTGGGGGATCCATTTGTCTGTTGTTCACAAAGTGAGCTTTATAAAAGTCTATATCATTTGGACAAAAACAACTGACAATTTGCATTTATACAAGATAAGATTTATCACTTTTCATGCTACTTTGTTGATGAGTTTTATCAACATACAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGGTAATAATTCTCTTCTTTCGGCGCTATCTGGTTTTCAAAAGAGCACTATTACCAATCGCAGTAAAAAAGAGCAAATTATTCTAATAATTAAGTCCCGTTGCAAGGAATTCCTAATGTACCTCCCATCTTGCCTGATCTTTCAGCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTTTGCACCAATCGATGAGCTTTTCCCTGATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAACAGTGAGTTTTTCTCATGTTAGCCTTTCTTTTTAAGTGCATTAGTTCTGTGTTGTATGGATAATTCTTGAAATTTTTCTGTTCTTTTGAACTCCCATGTAGTGCAAACCATTTTTGGTAGCTTATGGGTTAAAAGCCTTCTAACTTCTGTAGGATGGAGATCCATTAGACCTGAACATCTTGTTTCTACCTTGTTACTTCTATCTGGTTTGATTTTCAGCAGCTAGGATTTTAACCATCAATGTCTTCCACAGGATGGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAACTGCACAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAATTGCCTTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGCAATATGTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTCGGTCTGGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAGCTCGTTGGATTTGCCAAAGCTACCAGTAAGTACATGTTTATTTCCTATATATCTTATGAATGCCTTTTGGTATTAATAGATAGGAGCTGCATTATTGCTCTATACGGCTATACCACTACCTGTCCAAAATTAAAAATATAGGACTATTACCAAATATTAACTTGTATTCAAGCTGATAAGGATTTGTGGTGTTTGCAGGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAGATGATGCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCTGTTCTTTCAAGGTACTATAGTTTTTCCCTTGTTCTTTTCATAATTTCCAACTTGTACATTTTATGTCGTTACATTTAAGTGAGAATAAGCTTTGCCTTTGTATGGCTCATATATTTGGCACTATATATTCTTTCAGGAAAAGCCTGTATTTACTTTTGCCAACGAGATGGGACTAAACATGCTAGAAACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGTAGATAGCCACTTGCAAAATCCACATTTTCTTTTCCCCATGTAATAACAGCAATGTCCTAACTGCTAAACACAAACCAAGTAGAGATGCAAGAACTCACCGTAGCCACAGAGTAATCTTTCGATTTCGATTCAATCTGTTCTTGTTCAGGGTTACGTGTACCTGCCTGGTGGAGTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCTTCGTGTGACCCAAAATCCAATCCACCATGCTCGCAGTCATCGTCGTTGTCGTCAGATCTCCATTTTTTGCAATCTCTGTAGAAGAGAGGACACCAAACCAACCACAAACCTGTCAGCTGTTAGCTAATGATTCTACTAGCTTTTCTAGATCTTTGAAGGCAAAATGCTGCCGGTGCCTGTAAAGAGTGTGTGCGTGCGTGTGTAAATTTGGGCGCGTTTTGCACTAATTTGATCCGGGGTAAGGAGGCGCTGGCTGCTGCTGTGCTGTAGTTTGGTAAAAGTTGAGGACACTAACCTTGGATGGTCTCGAACTGTATGATGAAATTCCTAGCAGTAAAATTTCAACTTGGATCCGTGAAGA
More
|
||||||||||
| CDS seq | ATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGCTGCTCCGCGACTGCCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACCGAAAATTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGGTCTCCCAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATCCGTCATTGGGCAATGATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAAGTAACCCGTCTGGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGGCTACAGGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGCCTGGTCCGGATTCGTTTGGTATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAATCTAGAACCAACAAAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTGATTGTCGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAACTTGTTTACATGCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACACTTAGATACACAACTACAATGGAGGATGGCAGCCTTGTGGTCTGTGAGAGATCATTGAGTGGTTCTGGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTCCTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTGGATCTTGAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTAGTCAGAGGTTGAGTAGAGGCTTCAATGATGCTATTAGTGGTTTCAACGATGATGGTTGGTCTGTCATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTAGGAATACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGGCATCCATGCTACTGCAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATCGTTCTGAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCTCATGTTCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCACTTGCTCACACGGTGGAGAATGAGGAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTTTGCACCAATCGATGAGCTTTTCCCTGATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAACAGATGGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAACTGCACAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAATTGCCTTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGCAATATGTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTCGGTCTGGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAGCTCGTTGGATTTGCCAAAGCTACCAGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAGATGATGCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCTGTTCTTTCAAGGAAAAGCCTGTATTTACTTTTGCCAACGAGATGGGACTAAACATGCTAGAAACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTGGTGGAGTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCTTCGTGTGA
More
|
||||||||||
| Protein seq | MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMKQQLQNPSLGNDTSCESNVTTPQNPLRDASNPSGLLTIAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSTASAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVIIACNAKKVRNTSTSANAFVTPGGVICAKASMLLQSVPPAVLVRFLREHRSEWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLAHTVENEEILEVVRLEGQALTHDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVFAPIDELFPDDAPLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQADDAGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRKALYNEIPKLMEQGYVYLPGGVCLSGMGRHVSFEQAVAWKVLGEDNNVHCLAFCFVNWSFV |
||||||||||
| Function | Homeobox-leucine zipper protein HOX9 [UniProtKB/Swiss-Prot:A2Z8L4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0014390 | OsLima_10g0014390.01 | Chr10 | 20141799 | 20148765 | + | NAM | ||
| CDS seq | ATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGCTGCTCCGCGACTGCCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACCGAAAATTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGGTCTCCCAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATCCGTCATTGGGCAATGATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAAGTAACCCGTCTGGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGGCTACAGGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGCCTGGTCCGGATTCGTTTGGTATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAATCTAGAACCAACAAAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTGATTGTCGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAACTTGTTTACATGCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACACTTAGATACACAACTACAATGGAGGATGGCAGCCTTGTGGTCTGTGAGAGATCATTGAGTGGTTCTGGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTCCTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTGGATCTTGAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTAGTCAGAGGTTGAGTAGAGGCTTCAATGATGCTATTAGTGGTTTCAACGATGATGGTTGGTCTGTCATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTAGGAATACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGGCATCCATGCTACTGCAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATCGTTCTGAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCTCATGTTCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCACTTGCTCACACGGTGGAGAATGAGGAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTTTGCACCAATCGATGAGCTTTTCCCTGATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAACAGATGGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAACTGCACAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAATTGCCTTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGCAATATGTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTCGGTCTGGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAGCTCGTTGGATTTGCCAAAGCTACCAGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAGATGATGCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCTGTTCTTTCAAGGAAAAGCCTGTATTTACTTTTGCCAACGAGATGGGACTAAACATGCTAGAAACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTGGTGGAGTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCTTCGTGTGA
More
|
|||||||
| Protein seq | MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMKQQLQNPSLGNDTSCESNVTTPQNPLRDASNPSGLLTIAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSTASAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVIIACNAKKVRNTSTSANAFVTPGGVICAKASMLLQSVPPAVLVRFLREHRSEWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLAHTVENEEILEVVRLEGQALTHDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVFAPIDELFPDDAPLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQADDAGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRKALYNEIPKLMEQGYVYLPGGVCLSGMGRHVSFEQAVAWKVLGEDNNVHCLAFCFVNWSFV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0014390 | OsLima_10g0014390.02 | Chr10 | 20142526 | 20148766 | + | NAM | ||
| CDS seq | ATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGCTGCTCCGCGACTGCCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACCGAAAATTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGGTCTCCCAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATCCGTCATTGGGCAATGATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAAGTAACCCGTCTGGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGGCTACAGGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGCCTGGTCCGGATTCGTTTGGTATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAATCTAGAACCAACAAAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTGATTGTCGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAACTTGTTTACATGCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACACTTAGATACACAACTACAATGGAGGATGGCAGCCTTGTGGTCTGTGAGAGATCATTGAGTGGTTCTGGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTCCTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTGGATCTTGAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCAGCACTACGGCACATCAGACAAATTGCTCAAGAGACAAGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTAGTCAGAGGTTGAGTAGAGGCTTCAATGATGCTATTAGTGGTTTCAACGATGATGGTTGGTCTGTCATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTAGGAATACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGGCATCCATGCTACTGCAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATCGTTCTGAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCTCATGTTCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCACTTGCTCACACGGTGGAGAATGAGGAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTTTGCACCAATCGATGAGCTTTTCCCTGATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAACAGATGGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAACTGCACAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAATTGCCTTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGCAATATGTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTCGGTCTGGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAGCTCGTTGGATTTGCCAAAGCTACCAGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAGATGATGCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCTGTTCTTTCAAGGAAAAGCCTGTATTTACTTTTGCCAACGAGATGGGACTAAACATGCTAGAAACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTGGTGGAGTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCTTCGTGTGA
More
|
|||||||
| Protein seq | MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMKQQLQNPSLGNDTSCESNVTTPQNPLRDASNPSGLLTIAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSTASAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVIIACNAKKVRNTSTSANAFVTPGGVICAKASMLLQSVPPAVLVRFLREHRSEWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLAHTVENEEILEVVRLEGQALTHDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVFAPIDELFPDDAPLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQADDAGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRKALYNEIPKLMEQGYVYLPGGVCLSGMGRHVSFEQAVAWKVLGEDNNVHCLAFCFVNWSFV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.114632 | 0.082802 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0480200 | RBH | 1.555576 | 0.975666 | 4.297114 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33960 | RBH | 0.991873 | 0.653570 | 0.998519 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0480200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014790 | RBH | 0.176417 | 5.678800 | 20.373447 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015040 | RBH | 0.118732 | 3.319220 | 3.037027 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014480 | RBH | 1.062171 | 4.368829 | 22.445925 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014830 | RBH | 0.022099 | 0.207270 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014710 | RBH | 2.842544 | 8.344613 | 38.581688 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0297200 | RBH | 9.057949 | 11.973524 | 26.879438 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014670 | RBH | 0.090817 | 1.024149 | 2.316514 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0319800 | RBH | 9.714223 | 5.8270105 | 34.0555705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000860 | RBH | 0.167049 | 0.171704 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014300 | RBH | 0.149061 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014710 | RBH | 3.184901 | 9.599956 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014410 | RBH | 0.128956 | 0.0 | 1.864139 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014950 | RBH | 0.254013 | 2.947405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014640 | RBH | 0.000000 | 2.643862 | 5.792983 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014620 | RBH | 0.672999 | 7.992624 | 7.262199 |
