Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0002560 | OGI:10010270 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:3328474-3330323 | ||||||||
| Gene Symbol | HOX9, Oshox9, OsHox9, OsHB2, HB2, OSHB2 | ||||||||||
| DNA seq | gtgctgacctcctctaccgtgatggcctcctcgaccttgtggttgcgtccacggggggagggaggaggcggcacccgcccgagctgccgccggtgctcccctcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtgccccctcccttcccttgtggcggcagtggcgaaggtacctacgttggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttcccccgtcgccgcgttgcctctccgtcctctcctccgcagcttcccaaccgttcccctctcaactctcgacctctcctctctacgcggaacgccatgaccgtcgccgccgaggtcgacgcatcccctgacggagaggagaggaggaggcaagcttgcaatcgcacaaccatctatcgatttctcccttccttctctttcttctttctttctttctttcgtttccccctctcacatttcaggttattttttctcctcatcctctccggatgatttcacttttgctcgaaatctctcatgttgttgttgtgttgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtGGaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaaggtgagcaaaagcatgcagggatatactatcaaactggtttgccttttgtgtgtctggctgtgaaatgttctggacaaattggttgacaatggagcaatagcaatagtagtgttcaattgtttgccttggttgtgcatactctgcttcaactatatttaggaattgcaagtctatgtatttatttgttttgcttcctttcttgcataatggaacaacctttatataatcaaggaattatcagagtatgtgccagattaagccatccattaattagatgctgaagtaaactatatgactatattgcgatgtattctaattccactacttacaaaactgtagggtataagatttgcttatttttagaagataggctaaacgaggatcctttaggtgacatggccaaactaagacacatatacataacgtattatcatgcatctgatagtaatgcaaaacaatgcagtcctatttactttcactgcaggtatttaggctcatcttttatttttctcaagaggcacttaacatgatatacaaaatttgaagagttacattctttaaaaaacttctatgagttctgcctaaatgattgttatccatagtgtgcctaaataattgttcgatctagaggtgatccaaagattcgtctatattagacgtaacaataatgcagtgttttttttgtttattttttagcctacaaatgtttgacaagaagaggatgaaagagtgacataggcgagctctgtagcatatatagaatgtttgctatccactggtacatctttaacccgagcctacctactgtatagAtgtGtttagtacgtgcttactatgcttaattttggggataatatagtgcgacgtgtaagaaaattcagaactatgttgtatgctctagctgaatttgtttacttcctacaaaaaaatggatgaactactgatccagttcatgttgtg
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| CDS seq | atgatttcacttttgctcgaaatctctcatgttgttgttgtgttgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtGGaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga |
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:Q6TAQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0002560 | OsGoSa_10g0002560.01 | Chr10 | 3328474 | 3330323 | + | NAM | ||
| CDS seq | atgatttcacttttgctcgaaatctctcatgttgttgttgtgttgaaggcggcgaagggggaaactttggtggtggtggtggtggccggagaggaggatggcggcagcggcagtgacggcggagggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtGGaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga
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| Protein seq | MISLLLEISHVVVVLKAAKGETLVVVVVAGEEDGGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0002560 | OsGoSa_10g0002560.02 | Chr10 | 3329230 | 3329587 | + | IsoSeq | ||
| CDS seq | atgcagggatatactatcaaactggtttgccttttgtgtgtctgg |
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| Protein seq | MQGYTIKLVCLLCVW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 17.637552 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002470 | RBH | 1.223662 | 0.000000 | 8.923565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0048400 | RBH | 7.1766915 | 16.494827 | 20.5456295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0054000 | RBH | 2.142302 | 8.4804505 | 8.55395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002390 | RBH | 0.402143 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002580 | RBH | 0.857622 | 4.714236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
