Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0002580 | OGI:10010270 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:3313626-3315789 | ||||||||
| Gene Symbol | HOX9, Oshox9, OsHox9, OsHB2, HB2, OSHB2 | ||||||||||
| DNA seq | atgtctgtgaaggaaccaacggatggccatgcggtagatccggaaaaatcctctgaatcaagtgtaggagtttgttcaaaggagctatctgccaacccatccccaacacgcAacatctctctgcccaatcctcctcccggccaatccgccatccccatccatcaggctaatccatgcggcctcctCccggccgggggcaaggacggcgccggcgtttacaaagacgacggagcaaggggacgacatgcctcctgtgctgacctcctctaccgtgatggcctcctcgaccttgtggttgcgtccacggggggagggaggaggcggcacccgcccgagctgccgccggtgctccCCTcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtCccccctcccttcccTTGTggcggcagtggcgaGggtacctacgttggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttCccccgtcgccgcgttgcctctccgtcctctcCTccgcagcttcccatccgttcccctctcaactctcgacctctcctctctacgcggaacaccatgaccgtcgccgccgaggtcgacgcatcccctgacggagaggagaggaggaggcaagcttgcaatctcacaaccatctatcgatttctcccttccttctctttcttctttctttcTttctttcgtttccccctctcacatgtcaggttatttcttctcctcatcctctccggatgatttcacttttgctcgaaatctctcatgttgttgttgtgttgaaggcggcgaagggggaaactttggtggtggtggtggccggagaggaggatggcggcagcggtggcgatgcccgatgcggagcggcagcggcagtgacggcggcgggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaaggtgagcaaaagcatgcagggatatactatcaaactggtttgccttttgtgtgtgtggctgtgaaatgttctggacaaattggttgacaatggagcaatagcaatagtagtgttcaattgtttgccttggttgtgcatactctgcttcaactatatttagaaattgcaagtctatgtatttatttgttttgcttcctttcttgcataatggaacaacctttatatAatcaaggaagtatactgtaCttatcagagtatgtgccagattaagccatccattaattagatgctgaagtaaactatatgactatattgcgatgtattctaattccactacttacaaaactgtagggtataagatttgcttatttttagaagataggctaaacgaggatcctttaggtgacatggccaaactaagacacatatacataacgtattatcatgCatctgatagtaatgcAaaacaatgcagtcctatttactttcactgcaggtatttaggctcatcTtttatttttctcaagaggcacttgacatgatatacaaaatttgaagagttacattctttagaaaacttctatgagttctgcctaaatgattgttatccatagtgtgcctaaataaTtgttcgatctagaggtgatccaaagattcgtctatattagacgtaacaataatgcagtgttttttttgtttattttttagcctacaaatgtttgacaagaagaggatgaaagagtgacataggcgagctctgtagcatatatagaatgtttgctatccactggtacatctttaacccgagcctacctactgtatagatgtgtagtacgtgtactatgcttaattttggggataatatagtgcgacgtgtaagaaaattcagaactatgttgtatgctctagctgaatttgtttacttcctacaaaaaaatggatgaactactgatccagttcatgttgtgatcctcctccaaggagtttttttttgtt
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| CDS seq | atgtctgtgaaggaaccaacggatggccatgcggtagatccggaaaaatcctctgaatcaagtgtaggagtttgttcaaaggagctatctgccaacccatccccaacacgcAacatctctctgcccaatcctcctcccggccaatccgccatccccatccatcaggctaatccatgcggcctcctCccggccgggggcaaggacggcgccggcgtttacaaagacgacggagcaaggggacgacatgcctcctgtgctgacctcctctaccgtgatggcctcctcgaccttgaggcggcacccgcccgagctgccgccggtgctccCCTcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtCccccctcccttcccTTGTggcggcagtggcgaGggtacctacgttggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttCccccgtcgccgcgttgcctctccgtcctctcCTccgcagcttcccatccgttcccctctcaactctcgacctctcctctctacgcggaacaccatgaccgtcgccgccgaggtcgacgcatcccctgacggagaggagaggaggaggcaagcttgcaatctcacaaccatctatcgatttctcccttccttctctttcttctttctttcTttctttcgcggcgaagggggaaactttggtggtggtggtggccggagaggaggatggcggcagcggtggcgatgcccgatgcggagcggcagcggcagtgacggcggcgggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga
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| Protein seq | MSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLEAAPARAAAGAPLLLLHPLVVTAAVAAGGGQIRRPTPADPPSSPLPSLVAAVARVPTLAAEPAARLPPMPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPIRSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNLTTIYRFLPSFSFFFLSFFRGEGGNFGGGGGRRGGWRQRWRCPMRSGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:A2XBL9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0002580 | OsLaMu_10g0002580.01 | Chr10 | 3313626 | 3315789 | + | NAM | ||
| CDS seq | atgtctgtgaaggaaccaacggatggccatgcggtagatccggaaaaatcctctgaatcaagtgtaggagtttgttcaaaggagctatctgccaacccatccccaacacgcAacatctctctgcccaatcctcctcccggccaatccgccatccccatccatcaggctaatccatgcggcctcctCccggccgggggcaaggacggcgccggcgtttacaaagacgacggagcaaggggacgacatgcctcctgtgctgacctcctctaccgtgatggcctcctcgaccttgaggcggcacccgcccgagctgccgccggtgctccCCTcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtCccccctcccttcccTTGTggcggcagtggcgaGggtacctacgttggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttCccccgtcgccgcgttgcctctccgtcctctcCTccgcagcttcccatccgttcccctctcaactctcgacctctcctctctacgcggaacaccatgaccgtcgccgccgaggtcgacgcatcccctgacggagaggagaggaggaggcaagcttgcaatctcacaaccatctatcgatttctcccttccttctctttcttctttctttcTttctttcgcggcgaagggggaaactttggtggtggtggtggccggagaggaggatggcggcagcggtggcgatgcccgatgcggagcggcagcggcagtgacggcggcgggtacgacaaggccgggatggactccggcaagtacgtgcagtacacgccggatcaggtggaggcgctggagcgggtgtacgccgagtgccccaagcccagcttctctcgccgccagcagtcgccaacatcgagcccaagcagaagatcaaggtctggttcccaaaacagaagcctacaaatgtttgacaagaagaggatgaaagagtga
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| Protein seq | MSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLEAAPARAAAGAPLLLLHPLVVTAAVAAGGGQIRRPTPADPPSSPLPSLVAAVARVPTLAAEPAARLPPMPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPIRSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNLTTIYRFLPSFSFFFLSFFRGEGGNFGGGGGRRGGWRQRWRCPMRSGSGSDGGGYDKAGMDSGKYVQYTPDQVEALERVYAECPKPSFSRRQQSPTSSPSRRSRSGSQNRSLQMFDKKRMKE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0002580 | OsLaMu_10g0002580.02 | Chr10 | 3313730 | 3314929 | + | IsoSeq | ||
| CDS seq | cacgcAacatctctctgcccaatcctcctcccggccaatccgccatccccatccatcaggctaatccatgcggcctcctCccggccgggggcaaggacggcgccggcgtttacaaagacgacggagcaaggggacgacatgcctcctgtgctgacctcctctaccgtgatggcctcctcgaccttgtggttgcgtccacggggggagggaggaggcggcacccgcccgagctgccgccggtgctccCCTcctccttctccatccacttgtggtgacggcggcggtggcggcggggggagggcagatccggcgcccgacgccggcggatccgccgtcgtCccccctcccttcccTTGTggcggcagtggcgaGggtacctacgttggcggcagagccggccgcgcgtctgccgccgatgcccttccctcatggcggcgtcggaccggccgccggcgcaggactgccatacgtcttCccccgtcgccgcgttgcctctccgtcctctcCTccgcagcttcccatccgttcccctctcaactctcgacctctcctctctacgcggaacaccatgaccgtcgccgccgaggtcgacgcatc
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| Protein seq | HATSLCPILLPANPPSPSIRLIHAASSRPGARTAPAFTKTTEQGDDMPPVLTSSTVMASSTLWLRPRGEGGGGTRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASHPFPSQLSTSPLYAEHHDRRRRGRRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 3314352 | 3314521 | + | OsLaMu_10g0002580.01 | OsLaMu_10g0002580.02,OsLaMu_10g0002580.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.857622 | 4.714236 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0147300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002570 | RBH | 1.677754 | 3.445210 | 7.890133 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002530 | RBH | 0.328836 | 3.078553 | 3.011203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002470 | RBH | 1.223662 | 0.000000 | 8.923565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0048400 | RBH | 7.1766915 | 16.494827 | 20.5456295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0054000 | RBH | 2.142302 | 8.4804505 | 8.55395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002480 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002560 | RBH | 0.000000 | 17.637552 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002390 | RBH | 0.402143 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002560 | RBH | 1.199496 | 0.743933 | 1.630954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
