Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0147300 | OGI:10010270 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:2843303-2845284 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTGCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAAGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGCAGTGACGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGTACACGCCGGATCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGCTTCTGTCGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTCTGTGTGTCTGGCTGTGAAATGTTCTGGACAAATTGGTTGACAATGGAGCAATAGCAATAGTAGTGTTCAATTGTTTGCCTTGGTTGTGCATACTCTGCTTCAACTATATTTAGGAATTGCAAGTCTATGTATTTATTTGTTTTGCTTCCTTTCTTGCATAATGGAACAACCTTTATATAATCAAGGAAGTATACTGTACTTATCAGAGTATGTGCCAGATTAAGCCATCCATTAATTAGATGCTGAAGTAAACTATATGACTATATTGCGATGTATTCTAATTCCACTACTTACAAAACTGTAGGGTATAAGATTTGCTTATTTTTAGAAGATAGGCTAAACGAGGATCCTTTAGGTGATATGGCCAAACTAAGACACATATACATAACGTATTATCATGCATCTGATAGTAATGCAAAACAATGCAGTCCTATTTACTTTCACTGCAGGTATTTAGGCTCATCTTTTATTTTTCTCAAGAGGCACTTAACATGATATACAAAATTTGAAGAGTTACATTCTTTAAAAAACTTCTATGAGTTCTGCCTAAATGATTGTTATCCATAGTGTGCCTAAATAATTGTTCGATCTAGAGGTGATCCAAAGATTCGTCTATATTAGACGTAACAATAATGCAGTGTTTTTTTTGTTTATTTTTTAGCCTACAAATGTTTGACAAGAAGAGGATGAAAGAGTGACATAGGCGAGCTCTGTAGCATATATAGAATGTTTGCTATCCACTGGTACATCTTTAACCCGAGCCTACCTACTGTATAGATGTGTTTAGTACGTGCTTACTATGCTTAATTTTGGGGATAATATAGTGCGACGTGTAAGAAAATTCAGAACTATGTTGTATGCTCTAGCTGAATTTGTTTACTTCCTACAAAAAAAATGGATGAACTACTGATCCAGTTCATGTTGTG
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| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGA |
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| Protein seq | MPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPNCSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNRTTIYRFLPSFSFFFLSFFRFPLSHVRLFFLLILSG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0147300 | Os10t0147300-01 | Chr10 | 2843303 | 2844562 | + | irgsp1_rep | ||
| CDS seq | CATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGA
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| Protein seq | HLSAQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGGRRRHPPELPPVLPSSFSIHLW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0147300 | Os10t0147300-02 | Chr10 | 2843429 | 2845284 | + | irgsp1_rep | ||
| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGA
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| Protein seq | MPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPNCSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNRTTIYRFLPSFSFFFLSFFRFPLSHVRLFFLLILSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002570 | RBH | 1.677754 | 3.445210 | 7.890133 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002480 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002580 | RBH | 0.857622 | 4.714236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002560 | RBH | 1.199496 | 0.743933 | 1.630954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
