Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsAzu_10g0002570 | OGI:10010270 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr10:3177152-3179458 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | GATGTCACTTCTTTTGCATATGACTTTCACAAACAGTGGAAAGCCTAAGGACTATGATGTCTGTGAAGGAACCAACGGATGGCCATGCGGTAGATCCGGAAAAATCCTCTGAATCAAGTGTAGGAGTTTGTTCAAAGGAGCTATCTGCCAACCCATCCCCAACACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCTCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTCTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTTTGTGTGTGTGGCTGTGAAATGTTCTGGACAAATTGGTTGACAATGGAGCAATAGCAATAGTAGTGTTCAATTGTTTGCCTTGGTTGTGCATACTCTGCTTCAACTATATTTAGAAATTGCAAGTCTATGTATTTATTTGTTTTGCTTCCTTTCTTGCATAATGGAACAACCTTTATATAATCAAGGAAGTATACTGTACTTATCAGAGTATGTGCCAGATTAAGCCATCCATTAATTAGATGCTGAAGTAAACTATATGACTATATTGCGATGTATTCTAATTCCACTACTTACAAAACTGTAGGGTATAAGATTTGCTTATTTTTAGAAGATAGGCTAAACGAGGATCCTTTAGGTGACATGGCCAAACTAAGACACATATACATAACGTATTATCATGCATCTGATAGTAATGCAAAACAATGCAGTCCTATTTACTTTCACTGCAGGTATTTAGGCTCATCTTTTATTTTTCTCAAGAGGCACTTGACATGATATACAAAATTTGAAGAGTTACATTCTTTAGAAAACTTCTATGAGTTCTGCCTAAATGATTGTTATCCATAGTGTGCCTAAATAATTGTTCGATCTAGAGGTGATCCAAAGATTCGTCTATATTAGACGTAACAATAATGCAGTGTTTTTTTTGTTTATTTTTTAGCCTACAAATGTTTGACAAGAAGAGGATGAAAGAGTGACATAGGCGAGCTCTGTAGCATATATAGAATGTTTGCTATCCACTGGTACATCTTTAACCCGAGCCTACCTACTGTATAGATGTGTTTAGTACGTGCTTACTATGCTTAATTTTGGGGATAATATAGTGCGACGTGTAAGAAAATTCAGAACTATGTTGTATGCTCTAGCTGAATTTGTTTACTTCCTACAAAAAAATGGATGAACTACTGATCCAGTTCATGTTGTGATCCTCCTCCAAGGAGTTTTTTTTGTTTCTTTGCTATCTGAAAGATTCCTTTTTTTTTTTTTTGCTTTGTTGAAGTGGAAGGAGCTCATTGGTGTACCTTTGTTGAAATGGCTCCTTTTAATCCTCATTGTTTCACATGTCTGTTTCATTTTCGTTTTTAAGGGACTGGCCTTATTAAAGGTTGTTTAAAAGCTT
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CDS seq | GCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCTCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTCTTCTCCTCATCCTCTCC
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Protein seq | ATSLCPILLPANPPSPSIRLIHAASSRPGARTAPAFTKTTEQGDDMPPVLTSSTVMASSTLWLRPRGAARAAAGAPLLLLHPLVVTAAVAAGGGQIRRPTPADPPSSPLPSLVAAVARVPTLAAEPAARLPPMPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPIRSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNLTTIYRFLPSFSFFFLSFFRFPLSHVRLFLLLILS |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_10g0002570 | OsAzu_10g0002570.01 | Chr10 | 3177152 | 3178807 | + | NAM | ||
CDS seq | ATGATGTCTGTGAAGGAACCAACGGATGGCCATGCGGTAGATCCGGAAAAATCCTCTGAATCAAGTGTAGGAGTTTGTTCAAAGGAGCTATCTGCCAACCCATCCCCAACACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGA
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Protein seq | MMSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASHPFPSQLSTSPLYAEHHDRRRRGRRIP
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_10g0002570 | OsAzu_10g0002570.03 | Chr10 | 3177199 | 3179458 | + | NAM | ||
CDS seq | ATGATGTCTGTGAAGGAACCAACGGATGGCCATGCGGTAGATCCGGAAAAATCCTCTGAATCAAGTGTAGGAGTTTGTTCAAAGGAGCTATCTGCCAACCCATCCCCAACACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGA
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Protein seq | MMSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASHPFPSQLSTSPLYAEHHDRRRRGRRIP
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_10g0002570 | OsAzu_10g0002570.02 | Chr10 | 3177199 | 3179458 | + | NAM | ||
CDS seq | ATGATGTCTGTGAAGGAACCAACGGATGGCCATGCGGTAGATCCGGAAAAATCCTCTGAATCAAGTGTAGGAGTTTGTTCAAAGGAGCTATCTGCCAACCCATCCCCAACACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGA
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Protein seq | MMSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASHPFPSQLSTSPLYAEHHDRRRRGRRIP
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_10g0002570 | OsAzu_10g0002570.04 | Chr10 | 3177199 | 3178807 | + | NAM | ||
CDS seq | ATGATGTCTGTGAAGGAACCAACGGATGGCCATGCGGTAGATCCGGAAAAATCCTCTGAATCAAGTGTAGGAGTTTGTTCAAAGGAGCTATCTGCCAACCCATCCCCAACACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGA
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Protein seq | MMSVKEPTDGHAVDPEKSSESSVGVCSKELSANPSPTRNISLPNPPPGQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASHPFPSQLSTSPLYAEHHDRRRRGRRIP
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_10g0002570 | OsAzu_10g0002570.05 | Chr10 | 3177315 | 3179255 | + | IsoSeq | ||
CDS seq | GCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTCCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCATCCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCTCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTCTTCTCCTCATCCTCTCC
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Protein seq | ATSLCPILLPANPPSPSIRLIHAASSRPGARTAPAFTKTTEQGDDMPPVLTSSTVMASSTLWLRPRGAARAAAGAPLLLLHPLVVTAAVAAGGGQIRRPTPADPPSSPLPSLVAAVARVPTLAAEPAARLPPMPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPIRSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNLTTIYRFLPSFSFFFLSFFRFPLSHVRLFLLLILS
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
A5 | Chr10 | 3177918 | 3178087 | + | OsAzu_10g0002570.02 | OsAzu_10g0002570.03,OsAzu_10g0002570.04,OsAzu_10g0002570.02 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 1.677754 | 3.445210 | 7.890133 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0147300 | RBH | 3.546335 | 3.088844 | 1.832922 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05680 | RBH | 1.554232 | 1.681536 | 0.858524 |
Nipponbare | IRGSP 1.0 | RAP-db | Os10g0147300 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002670 | RBH | 0.107115 | 0.132912 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002390 | RBH | 7.822993 | 18.796539 | 12.045047 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002640 | RBH | 0.357218 | 0.348056 | 0.771354 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002460 | RBH | 0.214845 | 0.206555 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002480 | RBH | 0.000000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002580 | RBH | 0.857622 | 4.714236 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002560 | RBH | 1.199496 | 0.743933 | 1.630954 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002510 | RBH | 4.503583 | 18.868973 | 7.556621 |