Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0147300 | OGI:10010270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:2843300-2845284 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGCAACATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTGCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAAGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCATGTTGTTGTGTTGAAGGCGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGAGGAGGATGGCGGCAGCGGCAGTGACGGCGGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCAGTACACGCCGGATCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGCTTCTGTCGCCGCCAGCAGTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTCTGTGTGTCTGGCTGTGAAATGTTCTGGACAAATTGGTTGACAATGGAGCAATAGCAATAGTAGTGTTCAATTGTTTGCCTTGGTTGTGCATACTCTGCTTCAACTATATTTAGGAATTGCAAGTCTATGTATTTATTTGTTTTGCTTCCTTTCTTGCATAATGGAACAACCTTTATATAATCAAGGAAGTATACTGTACTTATCAGAGTATGTGCCAGATTAAGCCATCCATTAATTAGATGCTGAAGTAAACTATATGACTATATTGCGATGTATTCTAATTCCACTACTTACAAAACTGTAGGGTATAAGATTTGCTTATTTTTAGAAGATAGGCTAAACGAGGATCCTTTAGGTGATATGGCCAAACTAAGACACATATACATAACGTATTATCATGCATCTGATAGTAATGCAAAACAATGCAGTCCTATTTACTTTCACTGCAGGTATTTAGGCTCATCTTTTATTTTTCTCAAGAGGCACTTAACATGATATACAAAATTTGAAGAGTTACATTCTTTAAAAAACTTCTATGAGTTCTGCCTAAATGATTGTTATCCATAGTGTGCCTAAATAATTGTTCGATCTAGAGGTGATCCAAAGATTCGTCTATATTAGACGTAACAATAATGCAGTGTTTTTTTTGTTTATTTTTTAGCCTACAAATGTTTGACAAGAAGAGGATGAAAGAGTGACATAGGCGAGCTCTGTAGCATATATAGAATGTTTGCTATCCACTGGTACATCTTTAACCCGAGCCTACCTACTGTATAGATGTGTTTAGTACGTGCTTACTATGCTTAATTTTGGGGATAATATAGTGCGACGTGTAAGAAAATTCAGAACTATGTTGTATGCTCTAGCTGAATTTGTTTACTTCCTACAAAAAAAATGGATGAACTACTGATCCAGTTCATGTTGTG
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| CDS seq | CGCAACATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTGCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAAGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATC
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| Protein seq | RNISLPNPPSPSIRLIHAASSRPGARTAPAFTKTTEQGDDMPPVLTSSTVMASSTLWLRPRGEGGGGTRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASQLFPSQLSTSPLYAEHHDRRRRGRRI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0147300 | OsNip_10t0147300-01 | Chr10 | 2843303 | 2844562 | + | RAP2018-11-26 | ||
| CDS seq | CATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGA
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| Protein seq | HLSAQSAIPIHQANPCGLLPAGGKDGAGVYKDDGARGRHASCADLLYRDGLLDLVVASTGGGRRRHPPELPPVLPSSFSIHLW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0147300 | OsNip_10t0147300-02 | Chr10 | 2843429 | 2845284 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAGGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGA
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| Protein seq | MPFPHGGVGPAAGAGLPYVFPRRRVASPSSPPQLPNCSPLNSRPLLSTRNTMTVAAEVDASPDGEERRRQACNRTTIYRFLPSFSFFFLSFFRFPLSHVRLFFLLILSG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0147300 | OsNip_10t0147300-03 | Chr10 | 2843300 | 2844535 | + | IsoSeq | ||
| CDS seq | CGCAACATCTCTCTGCCCAATCCGCCATCCCCATCCATCAGGCTAATCCATGCGGCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACATGCCTCCTGTGCTGACCTCCTCTACCGTGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGTGGCGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTGCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAAGGTACCTACGTTGGCGGCAGAGCCGGCCGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCGGCGCAGGACTGCCATACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACTGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGCGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATC
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| Protein seq | RNISLPNPPSPSIRLIHAASSRPGARTAPAFTKTTEQGDDMPPVLTSSTVMASSTLWLRPRGEGGGGTRPSCRRCSPPPSPSTCGDGGGGGGGRADPAPDAGGSAVVPPPFPCGGSGEGTYVGGRAGRASAADALPSWRRRTGRRRRTAIRLPPSPRCLSVLSSAASQLFPSQLSTSPLYAEHHDRRRRGRRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.546335 | 3.088844 | 1.832922 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05680 | RBH | 1.554232 | 1.681536 | 0.858524 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002570 | RBH | 1.677754 | 3.445210 | 7.890133 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002530 | RBH | 0.328836 | 3.078553 | 3.011203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002670 | RBH | 0.107115 | 0.132912 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002640 | RBH | 0.357218 | 0.348056 | 0.771354 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002460 | RBH | 0.214845 | 0.206555 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0056520 | RBH | 0.000000 | 0.0 | 1.045884 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002560 | RBH | 1.199496 | 0.743933 | 1.630954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002510 | RBH | 4.503583 | 18.868973 | 7.556621 |
