Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0003000 | OGI:08000590 | 49/50 | Minghui 63 | MH63RS3 | HZAU | Chr08:256282-259242 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | AATCACACTCAGAGAAGACACAGGTGTTAAATCAAAATGAGTTATTGAATAAGTATTACAATTGCAAAATACCCTGTCATTCATGGAGCCAGATTCTCAATGGAAAAAGGATTTGCCCTATTACACATATTTCAGCAAATACAGTAACTCGACTCCTGCCTTCGCATGAAAAACAAGAATGCGTGGGAATACACAAGCTACAGGCAAAAGAGTCAAGCTCTGGGCCTCTGGCCATGATTTCTTCAAATGTGAAATGATCCCTAAATAAACACTGTTTTTGTGAACGACTGCTACATGTCTACACATGGTAAGTTCACACAAAAAAATTCCTTCGGTTAGATCAACAGTCCAAGGGAAGCAACTTGTCTGCTGGCCACCAAACAGCGTAGTTTCAGCTTTTCAGGTAGCTTAAGATCAATCCTGCTTGTTACGAACCTCACGAGCACGGTGCCTAAGCTCCGCCCTTTTCCATCTTACCATCAGCAGGCAGAGTGTGACAAGAGTGTTCACCTACAGAAACAAGACAAGAAACAGTTGCCCACAATGCACGGGATGGAAGACAGAAATGATCAACTGGATGAGACATGCACTTACCAAAATAAGGATCGTTATCAAAAGGAGGGGCCCAGACCAGACAACTGAAATGAACAGACCTTGGGGATCAAAATAATTCTGGCTTGAGAAGCTCTTCCAGTGTTGCCCTAAGAATGTATTTATTCTCTCAGCGAGAAATACACCAGAAACTGCACCAAACCAACAAGAGCAGGTAAATAAAATAGTAAGCTAGCATACCAGAAATAAATTCATTCTTTAAAATTGATGAAACGTACAAAATAACATGTGTCAGAATATGAAAGAGAATTTTCACTAATGCTCCGCTATCGTCTTGCAAAATAGGGTTGAGATATTCATCCTAACATATAGTTAATTCATGCTGAAGATAGCTGAAACAAGAGCAATGCATGCCCTTCACATCTACTGCATGGAACAAGAATCTGGAAAGGTTTACAGTGCATTAATTGACATAATTCGCCAGTAACTTGTTCAATATTCCTACCAATGTATAACTCAGAAGGTTCTACCACTAAAGAAACTTACATTAAATTTAAGCAAGTAGGTAGAACTCCACACAAATATGTTGTTTTTTTTTATGGTTTTAGGGAACCTCTATCCACATTTGAGGGAAAACGTTAAGTTAGAAAGCACATAAAAACAAGACAATTATGGTTGGTAGAGTATAACATTTAATATGATACCAGCAGAATATAGGAAAAAAGGATAATAGTATTTATGTGAATATAAGCATTCAATAAACATTATAAAATTGCAGGAGAACCATGCAGGACAATATCAGCAACCAAGACAAATCAAAACTTACATGTTAAAGCTGACAAGATAAGTTGGAAGTTGACATTTCTCCTTGAGATGATTGTTACCAGCAGCAGAATGGCATGAAAAATTAACATGCTGATCAACCAAGGTTCCTGATGAAGGGAATAATAAAGATTATAGCACAGACATAAAAATTGATACGATGAGATATTGCATTTACTAAATGTTTGCTAGGTTGACGAAACAGACAATTAAACGTGAAGGCAAATTAGATGTAGCAAAATATGGATATCCACTACCCAAAGTATTCGGGTCACCACTGAATTTTGTTTGTCTTTAATACCACGGATAGTGTGCAGTTGGTTATTCATTTTACAATTCCAACTACCTATATTAGCTTTCATTTAGTATTCCTTGTTTTGAGAAAAGGAAGGAACTAGAAATTCAAGGTGTATGGTTGACTGGGTCAAGGAGGCTTTCCCCAGCAACATGGTACACGGATGGCCTGTCGGCATAGATGGAGCAACATAGCATGACAGTGCAAAGCATGCGAAAACTCAGGTATGGTATCACGTCCCGATAGAAGATTAGAGCTGTTGCGTTGTGTTTATGATAATGGAAAGGGAGAGGGCTACCTCTTTGCTTGTGAAGAAAACAAAATAGATTAGATATGTCATTCCGTAAGCATGGTATGACTACACAGTACAGTACACTTGTAAAAAACCCAAAGCTCATTAGTTTTCTCCATCTATCGATGGTTTCATGTACATAGGAAAGACAGGCACTCAATATTGTTGATTGGGGCAAAGAATTATCGCCATAGAAATTATATAGTTAGATCCGTCACAAGAAGCATGCATCATCTTTTTTTGTGGGATTTTGGATGAATAGCAAGCATCACAAGGTGGGTGTCGTCATTCATTTGCTAAACTAGCACTACTCCCTTTGATAAGCCCTCAACTATATACTGTATCAGGTAGCCCTATTGCTTTTCACTTGTCTTGTCTAATCTATCATACTGATATTGATGCGCGCGAGGCAGGGGAACGAATTTTCTTACATTATTTAATTACTTGATGATTGAGGAGCAAAAGGTTGAAGTGGGAAGTTAGATCCCAGGTAGATCCAGGGCAGATGGGGAGCAAGAAGGCTATAAGAAAGAAACCGACCTTCCAGTCGACGGCGTGGAAGAAGCCGAGGAAGGAGACGAGGGCGGGGCGGAATCCGGAGCGGAGGTCGGAGGAGACGCGCCCAAAGAGCTCCGCCACCACGTCGGCGTGCTCGTTCAGCGCCTCCCGCACCTCACCCACCGCGCGCCCCACCATCTCCGCCGCCGACGCCGACGACGCCGCGTCGCCCATCTCTCCGGCGAGTCCAAGGAAGACTCGAGAGAGAGGCGAGTGAGATCGATCCAAGGTTGCGGAGAAGACGAGATGAGAGAAAATAATTAATTAAATAAATAAAAGCCCCCTCTTCTGCTGATCGGGGCCCACACGTCAGCCACCTATATACAGTATATGTTCTCGAAAATTCTCTCTACAACTCTCGAGTAGTGATTATATCACAGTTTCTCACCATCTTCCGCGTGTCTTCCACTTCCAGATGTTGCTATGTTAACGTGAGCAAACA
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| CDS seq | ATGGGCGACGCGGCGTCGTCGGCGTCGGCGGCGGAGATGGTGGGGCGCGCGGTGGGTGAGGTGCGGGAGGCGCTGAACGAGCACGCCGACGTGGTGGCGGAGCTCTTTGGGCGCGTCTCCTCCGACCTCCGCTCCGGATTCCGCCCCGCCCTCGTCTCCTTCCTCGGCTTCTTCCACGCCGTCGACTGGAAGGAACCTTGGTTGATCAGCATGTTAATTTTTCATGCCATTCTGCTGCTGGTAACAATCATCTCAAGGAGAAATGTCAACTTCCAACTTATCTTGTCAGCTTTAACATTTTCTGGTGTATTTCTCGCTGAGAGAATAAATACATTCTTAGGGCAACACTGGAAGAGCTTCTCAAGCCAGAATTATTTTGATCCCCAAGGTCTGTTCATTTCAGTTGTCTGGTCTGGGCCCCTCCTTTTGATAACGATCCTTATTTTGGTGAACACTCTTGTCACACTCTGCCTGCTGATGGTAAGATGGAAAAGGGCGGAGCTTAGGCACCGTGCTCGTGAGGTTCGTAACAAGCAGGATTGA
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| Protein seq | MGDAASSASAAEMVGRAVGEVREALNEHADVVAELFGRVSSDLRSGFRPALVSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVRWKRAELRHRAREVRNKQD |
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| Function | Transmembrane protein 18 [UniProtKB/Swiss-Prot:Q28GF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0003000 | OsMH63_08T0003000.1 | Chr08 | 256282 | 259242 | - | maker | ||
| CDS seq | ATGGGCGACGCGGCGTCGTCGGCGTCGGCGGCGGAGATGGTGGGGCGCGCGGTGGGTGAGGTGCGGGAGGCGCTGAACGAGCACGCCGACGTGGTGGCGGAGCTCTTTGGGCGCGTCTCCTCCGACCTCCGCTCCGGATTCCGCCCCGCCCTCGTCTCCTTCCTCGGCTTCTTCCACGCCGTCGACTGGAAGGAACCTTGGTTGATCAGCATGTTAATTTTTCATGCCATTCTGCTGCTGGTAACAATCATCTCAAGGAGAAATGTCAACTTCCAACTTATCTTGTCAGCTTTAACATTTTCTGGTGTATTTCTCGCTGAGAGAATAAATACATTCTTAGGGCAACACTGGAAGAGCTTCTCAAGCCAGAATTATTTTGATCCCCAAGGTCTGTTCATTTCAGTTGTCTGGTCTGGGCCCCTCCTTTTGATAACGATCCTTATTTTGGTGAACACTCTTGTCACACTCTGCCTGCTGATGGTAAGATGGAAAAGGGCGGAGCTTAGGCACCGTGCTCGTGAGGTTCGTAACAAGCAGGATTGA
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| Protein seq | MGDAASSASAAEMVGRAVGEVREALNEHADVVAELFGRVSSDLRSGFRPALVSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVRWKRAELRHRAREVRNKQD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0003000 | OsMH63_08T0003000.2 | Chr08 | 256282 | 259242 | - | maker | ||
| CDS seq | ATGGGCGACGCGGCGTCGTCGGCGTCGGCGGCGGAGATGGTGGGGCGCGCGGTGGGTGAGGTGCGGGAGGCGCTGAACGAGCACGCCGACGTGGTGGCGGAGCTCTTTGGGCGCGTCTCCTCCGACCTCCGCTCCGGATTCCGCCCCGCCCTCGTCTCCTTCCTCGGCTTCTTCCACGCCGTCGACTGGAAGGAACCTTGGTTGATCAGCATGTTAATTTTTCATGCCATTCTGCTGCTGGTAACAATCATCTCAAGGAGAAATGTCAACTTCCAACTTATCTTGTCAGCTTTAACATTTTCTGGTGTATTTCTCGCTGAGAGAATAAATACATTCTTAGGGCAACACTGGAAGAGCTTCTCAAGCCAGAATTATTTTGATCCCCAAGGTCTGTTCATTTCAGTTGTCTGGTCTGGGCCCCTCCTTTTGATAACGATCCTTATTTTGGTAAGTGCATGTCTCATCCAGTTGATCATTTCTGTCTTCCATCCCGTGCATTGTGGGCAACTGTTTCTTGTCTTGTTTCTGTAG
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| Protein seq | MGDAASSASAAEMVGRAVGEVREALNEHADVVAELFGRVSSDLRSGFRPALVSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVSACLIQLIISVFHPVHCGQLFLVLFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.1177435 | 33.462755 | 31.829529 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0104100 | RBH | 1.049039 | 1.943267 | 6.701527 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01350 | RBH | 0.895556 | 1.035529 | 1.605478 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0104100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000310 | RBH | 0.970992 | 20.365061 | 6.718065 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000320 | RBH | 0.223410 | 9.420298 | 2.971262 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000330 | RBH | 0.000000 | 27.597231 | 9.420821 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000310 | RBH | 0.621460 | 1.593583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000290 | RBH | 8.281219 | 47.414577 | 16.572601 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000260 | RBH | 0.275275 | 3.569705 | 2.231084 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0003000 | RBH | 17.8307265 | 34.4577105 | 30.3423455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000340 | RBH | 0.256128 | 0.842049 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000300 | RBH | 1.069016 | 26.742809 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000310 | RBH | 0.000000 | 66.460587 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000310 | RBH | 0.332717 | 4.047326 | 1.988266 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000310 | RBH | 0.105511 | 16.068605 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000320 | RBH | 1.177386 | 24.701551 | 7.051940 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000320 | RBH | 0.759788 | 31.714228 | 9.378207 |
| Os XI: R9311 | R9311 | AGIS | R9311C08g27915 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_08g0003000 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_08g0003200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_08g0003100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_08g0003300 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0812879600.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0826557400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0823719800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0825692200.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0817301000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0820435800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0821576800.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0816842600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0814232000.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0812779200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0817384400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0825428800.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0817803800.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0820816000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0816101600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0812914600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0812914800.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0820092600.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0815033400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0816162000.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0832483400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0823951900.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0816701200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0812828200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0818380600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0821573300.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0823547200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0818192400.01 | RBH | None | None | None |
