Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0000340 | OGI:08000590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:262157-265023 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatcacactcagagaagacacaggtgttaaatcaaaatgagttattgaataagtattacaattgcaaaataccctgtcattcatggagccagattctcaatggaaaaaggatttgccctattacacatatttcagcaaatacagtaactcgactcctgccttcgcatgaaaaacaagaatgcgtgggaatacacaagctacaggcaaaagagtcaagctctgggcctctggccatgatttcttcaaatgtgaaatgatccctaaataaacactgtttttgtgaacgactgctacatgtctacacatggtaagttcacacAaaaaaattccttcggttagatcaacagtccaagggaagcaacttgtctgctggccaccaaacagcgtagtttcagcttttcaggtagcttaagatcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatcttaccatcagcaggcagagtgtgacaagagtgttcacctacagaaacaagacaagaaacagttgcccacaatgcacgggatggaagacagaaatgatcaactggatgagacatgcacttaccaaaataaggatcgttatcaaaaggaggggcccagaccagacaactgaaatgaacagaccttggggatcaaaataattctggcttgagaagctcttccagtgttgccctaagaatgtatttattctctcagcgagaaatacaccagaaactgcaccaaaccaacaagagcaggtaaataaaatagtaagctagcataccagaaataaattcattctttaaaattgatgaaacgtacaaaataacatgtgtcagaatatgaaagagaattttcactaatgctccgctatcgtcttgcaaaatagggttgagatattcatcctaacatatagttaattcatgctgaagatagctgaaacaagagcaatgcatgcccttcacatctactgcatggaacaagaatctggaaaggtttacagtgcattaattgacataattcgccagtaacttgttcaatattcctaccaatgtataactcagaaggttctaccactaaagaaacttacattaaatttaagcaagtaggtagaactccacacaaatatgttgtttttttttatggttttagggaacctctatccacatttgagggaaaacgttaagttagaaagcacataaaaacaagacaattatggttggtagagtataacatttaatatgataccagcagaatataggaaaaaaggataatagtatttatgtgaatataagcattcaataaacattataaaattgcaggagaaccatgcaggacaatatcagcaaccaagacaaatcaaaacttacatgttaaagctgacaagataagttggaagttgacatttctccttgagatgattgttaccagcagcagaatggcatgaaaaattaacatgctgatcaaccaaggttcctgatgaagggaataataaagattatagcacagacataaaaattgatacgatgagatattgcatttactaaatgtttgctaggttgacgaaacagacaattaaacgtgaaggcaaattagatgtagcaaaatatggatatccactacccaaagtattcgggtcaccactgaattttgtttgtctttaataccacggatagtgtgcagttggttattcattttacaattccaactacctatattagctttcatttagtattccttgttttgagaaaaggaaggaactagaaattcaaggtgtatggttgactgggtcaaggaggctttccccagcaacatggtacacggatggcctgtcggcatagatggagcaacatagcatgacagtgcaaagcatgcgaaaactcaggtatggtatcacgtcccgatagaagattagagctgttgcgttgtgtttatgataatggaaagggagagggctacctctttgcttgtgaagaaaacaaaatagattagatatgtcattccgtaagcatggtatgactacacagtacagtacacttgtaaaaaacccaaagctcattagttttctccatctatcgatggtttcatgtacataggaaagacaggcactcaatattgttgattggggcaaagaattatcgccatagaaattatatagttagatccgtcacaagaagcatgcatcatctttttttgtgggattttggatgaatagcaagcatcacaaggtgggtgtcgtcattcatttgctaaactagcactactccctttgataagccctcaactatatactgtatcaggtagccctattgcttttcacttgtcttgtctaatctatcatactgatattgatgcgcgcgaggcaggggaacgaattttcttacattatttaattacttgatgattgaggagcaaaaggttgaagtgggaagttagatcccaggtagatccagggcagatggggagcaagaaggctataagaaagaaaccgaccttccagtcgacggcgtggaagaagccgaggaaggagacgagggcggggcggaatccggagcggaggtcggaggagacgcgcccaaagagctccgccaccacgtcggcgtgctcgttcagcgcctcccgcacctcacccaccgcgcgccccaccatctccgccgccgacgccgacgacgccgcgtcgcccatctctccggcgagtccaaggaagactcgagagagaggcgagtgagatcgatccaaggttgcggagaagacgagatgagagaaaataattaattaaataaataaaagccccctcttctgctgatcggggcccacacgtcagccacctatatacagtatatgttctcgaaaattctc
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| CDS seq | atgggcgacgcggcgtcgtcggcgtcggcggcggagatggtggggcgcgcggtgggtgaggtgcgggaggcgctgaacgagcacgccgacgtggtggcggagctctttgggcgcgtctcctccgacctccgctccggattccgccccgccctcgtctccttcctcggcttcttccacgccgtcgactggaaggaaccttggttgatcagcatgttaatttttcatgccattctgctgctggtaacaatcatctcaaggagaaatgtcaacttccaacttatcttgtcagctttaacattttctggtgtatttctcgctgagagaataaatacattcttagggcaacactggaagagcttctcaagccagaattattttgatccccaaggtctgttcatttcagttgtctggtctgggcccctccttttgataacgatccttattttggtgaacactcttgtcacactctgcctgctgatggtaagatggaaaagggcggagcttaggcaccgtgctcgtgaggttcgtaacaagcaggattga
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| Protein seq | MGDAASSASAAEMVGRAVGEVREALNEHADVVAELFGRVSSDLRSGFRPALVSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVRWKRAELRHRAREVRNKQD |
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| Function | Transmembrane protein 18 [UniProtKB/Swiss-Prot:Q28GF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0000340 | OsLima_08g0000340.01 | Chr08 | 262157 | 265023 | - | NAM | ||
| CDS seq | atgggcgacgcggcgtcgtcggcgtcggcggcggagatggtggggcgcgcggtgggtgaggtgcgggaggcgctgaacgagcacgccgacgtggtggcggagctctttgggcgcgtctcctccgacctccgctccggattccgccccgccctcgtctccttcctcggcttcttccacgccgtcgactggaaggaaccttggttgatcagcatgttaatttttcatgccattctgctgctggtaacaatcatctcaaggagaaatgtcaacttccaacttatcttgtcagctttaacattttctggtgtatttctcgctgagagaataaatacattcttagggcaacactggaagagcttctcaagccagaattattttgatccccaaggtctgttcatttcagttgtctggtctgggcccctccttttgataacgatccttattttggtgaacactcttgtcacactctgcctgctgatggtaagatggaaaagggcggagcttaggcaccgtgctcgtgaggttcgtaacaagcaggattga
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| Protein seq | MGDAASSASAAEMVGRAVGEVREALNEHADVVAELFGRVSSDLRSGFRPALVSFLGFFHAVDWKEPWLISMLIFHAILLLVTIISRRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVRWKRAELRHRAREVRNKQD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.256128 | 0.842049 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0104100 | RBH | 1.049039 | 1.943267 | 6.701527 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01350 | RBH | 0.895556 | 1.035529 | 1.605478 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0104100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000310 | RBH | 0.970992 | 20.365061 | 6.718065 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000320 | RBH | 0.223410 | 9.420298 | 2.971262 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000330 | RBH | 0.000000 | 27.597231 | 9.420821 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000310 | RBH | 0.621460 | 1.593583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000290 | RBH | 8.281219 | 47.414577 | 16.572601 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0003000 | RBH | 12.1177435 | 33.462755 | 31.829529 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000260 | RBH | 0.275275 | 3.569705 | 2.231084 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0003000 | RBH | 17.8307265 | 34.4577105 | 30.3423455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000300 | RBH | 1.069016 | 26.742809 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000310 | RBH | 0.000000 | 66.460587 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000310 | RBH | 0.332717 | 4.047326 | 1.988266 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000310 | RBH | 0.105511 | 16.068605 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000320 | RBH | 1.177386 | 24.701551 | 7.051940 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000320 | RBH | 0.759788 | 31.714228 | 9.378207 |
