Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0025300 | OGI:12004120 | 46/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:1474760-1475625 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127652_MH63RS3_INV1201360,125619_MH63RS3_INV1200550,TM_MH63RS3_INV1201350,117534_MH63RS3_INV1201090,
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| DNA seq | ATGCACACATGGCCTATTTTTTGTGCCAAAACTTGCCACAAACAACTTAGGTATGGTTTGGTAAGAATTAGTCTATGACATAGTACCATAAGTGTATCATGTCAACACTCAACAGTTATGATAGTGAATAAGACACTCATCACCTACTACTATAATTTAAGAAAATCGTTAAACGAGTAATCGTTATTTCCTCATATTTTCTCTTTCCGCCTTCCAGTTCCTGGATCCAGGTGACCAGGTCGGACAGCTGCGGTCAACGCAAACAACGAGTAAACGCAAGGCTGCAAGCAGAAAGGGTCAACGCGAACAACGAGTAAACGCAAGGCTGCAAGAAGAAAGGCGCAAGGTACGAGCCGTGCCGCGAGCAGCGGTGTGCGCTAGACGGAGCAGTGCAGCCACGGTAGACGTGCAGGCTGCATCGACAAAGGGCGGTCATCGGTGCTGCTCAAGGAGTAGCAGCAGGACCTCCAGGTAGCCGCGACCGTCGAAAGCATCAGCAGATCCCAAAATCAGTATGTGCCCTTCAATCTATCCTCAGCTCAGCTTTCTCGATGTGGATTCGTCCTCCAAATTCTTCTCTTGCCCTTAGCAAAATTGTCCATTTTATGTGTAATGAATCTGTGCTAAGATCTATGGATTCATTCTCCAATTCTCTGTGCTATTTCATTCTTTGTCCATGTCTTCGCGGTGAATAATCGGTGAAAAGTGGGCTCGAGTATGTCACAGCGAATCTCGGGAACTTCGTCCCGAAACGAGGCTTGACAATGTACCGATCGCAGCCGGATCTTGTCTGGTATAAGGCGGACGAGCGCCTCTATTGCTCCCTCACTGCGCCGCCGCCGTCGTCGTGTGAGGAGGATGGATGA
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| CDS seq | ATGCACACATGGCCTATTTTTTGTGCCAAAACTTGCCACAAACAACTTAGGTATGGTTTGTTCCTGGATCCAGGTGACCAGGTCGGACAGCTGCGGTCAACGCAAACAACGAGTAAACGCAAGGCTGCAAGCAGAAAGGGTCAACGCGAACAACGAGTAAACGCAAGGCTGCAAGAAGAAAGGCGCAAGGTACGAGCCGTGCCGCGAGCAGCGGTGTGCGCTAGACGGAGCAGTGCAGCCACGGTAGACGTGCAGGCTGCATCGACAAAGGGCGGTCATCGGTGCTGCTCAAGGAGTAGCAGCAGGACCTCCAGTGGGCTCGAGTATGTCACAGCGAATCTCGGGAACTTCGTCCCGAAACGAGGCTTGACAATGTACCGATCGCAGCCGGATCTTGTCTGGTATAAGGCGGACGAGCGCCTCTATTGCTCCCTCACTGCGCCGCCGCCGTCGTCGTGTGAGGAGGATGGATGA
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| Protein seq | MHTWPIFCAKTCHKQLRYGLFLDPGDQVGQLRSTQTTSKRKAASRKGQREQRVNARLQEERRKVRAVPRAAVCARRSSAATVDVQAASTKGGHRCCSRSSSRTSSGLEYVTANLGNFVPKRGLTMYRSQPDLVWYKADERLYCSLTAPPPSSCEEDG |
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| Function | Putative zinc finger CCCH domain-containing protein 64 [UniProtKB/Swiss-Prot:A3CEM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0025300 | OsMH63_12T0025300.1 | Chr12 | 1474760 | 1475625 | + | maker | ||
| CDS seq | ATGCACACATGGCCTATTTTTTGTGCCAAAACTTGCCACAAACAACTTAGGTATGGTTTGTTCCTGGATCCAGGTGACCAGGTCGGACAGCTGCGGTCAACGCAAACAACGAGTAAACGCAAGGCTGCAAGCAGAAAGGGTCAACGCGAACAACGAGTAAACGCAAGGCTGCAAGAAGAAAGGCGCAAGGTACGAGCCGTGCCGCGAGCAGCGGTGTGCGCTAGACGGAGCAGTGCAGCCACGGTAGACGTGCAGGCTGCATCGACAAAGGGCGGTCATCGGTGCTGCTCAAGGAGTAGCAGCAGGACCTCCAGTGGGCTCGAGTATGTCACAGCGAATCTCGGGAACTTCGTCCCGAAACGAGGCTTGACAATGTACCGATCGCAGCCGGATCTTGTCTGGTATAAGGCGGACGAGCGCCTCTATTGCTCCCTCACTGCGCCGCCGCCGTCGTCGTGTGAGGAGGATGGATGA
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| Protein seq | MHTWPIFCAKTCHKQLRYGLFLDPGDQVGQLRSTQTTSKRKAASRKGQREQRVNARLQEERRKVRAVPRAAVCARRSSAATVDVQAASTKGGHRCCSRSSSRTSSGLEYVTANLGNFVPKRGLTMYRSQPDLVWYKADERLYCSLTAPPPSSCEEDG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0129550 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03554 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0129550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38276 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223564100.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237056500.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_030700 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233467100.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | OsDGG1226699700.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232088500.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1224825900.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222069500.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218287700.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1226950700.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235322100.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223268700.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233076700.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1218880300.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223114900.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1224245500.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1231375500.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1220876500.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1244702700.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1230865600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226281900.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221197900.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1226818700.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229138700.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231550900.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1230445100.01 | SBH | None | None | None |
